Os06g0670500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0670500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.92 | 0.225 | 11.5 | 0.785 | 0.511 | -1.01 | -0.0965 | 2.03 | 0.277 | 1.34 | 16.03 | 996 | -- | -- |
| 25.7 | 0.236 | 11.5 | 0.595 | 0.401 | -1.01 | 0.238 | -- | 0.29 | 2.15 | 9.624 | 8974 | -- | -- |
| 22.94 | 0.223 | 11.5 | 0.779 | 0.509 | -1 | -- | 1.96 | 0.275 | 1.49 | 16 | 1033 | -- | -- |
| 25.81 | 0.237 | 11.5 | 0.609 | 0.395 | -1.01 | -- | -- | 0.293 | 2.17 | 9.524 | 9116 | -- | -- |
| 30.8 | 0.26 | 11.5 | 0.461 | -- | -1.14 | -- | 1.29 | 0.196 | -- | 14.03 | 1734 | -- | -- |
| 41.95 | 0.304 | 11.6 | 0.0684 | 0.371 | -- | 0.164 | -- | -0.00993 | 2.28 | -- | -- | -- | -- |
| 42.04 | 0.304 | 11.6 | 0.0637 | 0.372 | -- | -- | -- | -0.0109 | 2.32 | -- | -- | -- | -- |
| 32.22 | 0.266 | 11.6 | 0.283 | -- | -1.12 | -- | -- | 0.147 | -- | 10.16 | 8989 | -- | -- |
| 31.78 | 0.263 | 11.6 | -- | 0.486 | -0.574 | -- | -- | 0.0937 | 2.07 | 17.81 | 2511 | -- | -- |
| 50.24 | 0.331 | 11.6 | 0.0794 | -- | -- | -- | -- | -0.00186 | -- | -- | -- | -- | -- |
| 42.15 | 0.304 | 11.6 | -- | 0.373 | -- | -- | -- | -0.018 | 2.32 | -- | -- | -- | -- |
| 34.21 | 0.273 | 11.6 | -- | -- | -1.03 | -- | -- | 0.106 | -- | 10.16 | 8989 | -- | -- |
| 50.41 | 0.331 | 11.6 | -- | -- | -- | -- | -- | -0.0107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 40 | 22.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 49 | 22.16 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 51 | 22.18 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 92 | 22.58 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 94 | 22.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 103 | 22.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 128 | 22.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 149 | 22.82 | temperature | 20 | 1440 | > th | dose dependent | sin | 20 | NA |
| 208 | 23.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 224 | 23.06 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 251 | 23.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 289 | 23.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 346 | 23.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 412 | 23.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 414 | 23.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 416 | 23.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 532 | 23.45 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 558 | 23.47 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 574 | 23.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 710 | 23.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 711 | 23.61 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 743 | 23.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 873 | 23.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 1 |