Os09g0571400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclophilin 1.
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Os09g0571400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclophilin 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.89 | 0.455 | 9.77 | 1.87 | 1.63 | -1.62 | 0.612 | 0.718 | 0.354 | 17.1 | 14.7 | 556 | -- | -- |
| 94.25 | 0.452 | 9.79 | 1.77 | 1.63 | -1.64 | 0.782 | -- | 0.324 | 17.2 | 14.41 | 559 | -- | -- |
| 94.71 | 0.453 | 9.76 | 1.93 | 1.64 | -1.62 | -- | 1.09 | 0.369 | 17.1 | 12.02 | 540 | -- | -- |
| 95.58 | 0.455 | 9.79 | 1.74 | 1.64 | -1.59 | -- | -- | 0.319 | 17.1 | 13.52 | 549 | -- | -- |
| 168.4 | 0.604 | 9.75 | 1.83 | -- | -1.64 | -- | 0.0496 | 0.343 | -- | 8.668 | 1213 | -- | -- |
| 124.79 | 0.524 | 9.83 | 1.37 | 1.29 | -- | 0.354 | -- | 0.0786 | 16.5 | -- | -- | -- | -- |
| 125.13 | 0.524 | 9.83 | 1.37 | 1.29 | -- | -- | -- | 0.0805 | 16.5 | -- | -- | -- | -- |
| 168.4 | 0.604 | 9.76 | 1.82 | -- | -1.64 | -- | -- | 0.34 | -- | 7.18 | 1211 | -- | -- |
| 166.64 | 0.601 | 9.85 | -- | 1.46 | -0.8 | -- | -- | 0.0255 | 16.8 | 5.26 | 466 | -- | -- |
| 213.89 | 0.683 | 9.82 | 1.32 | -- | -- | -- | -- | 0.0465 | -- | -- | -- | -- | -- |
| 174.68 | 0.618 | 9.86 | -- | 1.26 | -- | -- | -- | -0.0722 | 16.5 | -- | -- | -- | -- |
| 238.25 | 0.719 | 9.85 | -- | -- | -0.747 | -- | -- | -0.0942 | -- | 24.34 | 1237 | -- | -- |
| 259.91 | 0.752 | 9.85 | -- | -- | -- | -- | -- | -0.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.37 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 8 | 90.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 18 | 92.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 18 |
| 22 | 92.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 17 |
| 23 | 92.13 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 43 | 92.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 56 | 92.82 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 70 | 93.04 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 116 | 93.41 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 131 | 93.58 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 149 | 93.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 199 | 94.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 206 | 94.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 237 | 94.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 5 |
| 247 | 94.60 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 253 | 94.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 14 |
| 288 | 94.72 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 305 | 94.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 318 | 94.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 355 | 94.95 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 501 | 95.42 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 582 | 95.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 12 |
| 699 | 95.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 803 | 95.98 | temperature | 15 | 30 | > th | dose dependent | rect. | 12 | 21 |
| 921 | 96.18 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |