BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0571400 Os09g0571400|AK103109
(179 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0571400 Cyclophilin 1 343 4e-95
Os02g0121300 Cyclophilin 2 239 1e-63
Os06g0708500 Similar to Cyclophilin 218 2e-57
AK062540 216 9e-57
Os06g0216800 Similar to Cyclophilin-40 (Expressed protein) 192 8e-50
Os10g0154700 Similar to Cyclophilin Dicyp-2 189 1e-48
Os02g0761100 Similar to Cyclophilin-40 (Expressed protein) 188 2e-48
Os05g0103200 Peptidyl-prolyl cis-trans isomerase, cyclophil... 188 2e-48
Os09g0537600 Similar to Cyclophilin-like protein (Single do... 183 5e-47
Os03g0811600 Similar to Peptidyl prolyl isomerase H 174 3e-44
Os08g0557500 Similar to Yarrowia lipolytica chromosome C of... 108 2e-24
Os06g0130500 Similar to Cyclophilin-like protein PPIL3b 107 6e-24
Os08g0559400 Similar to Cyclophilin-like protein 97 5e-21
Os01g0582400 Similar to Multidomain cyclophilin type peptid... 82 2e-16
Os02g0111200 72 2e-13
Os06g0670400 72 2e-13
Os06g0670500 Similar to Multidomain cyclophilin type peptid... 71 3e-13
>Os09g0571400 Cyclophilin 1
Length = 179
Score = 343 bits (880), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 167/179 (93%), Positives = 167/179 (93%)
Query: 1 MASKNPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGS 60
MASKNPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGS
Sbjct: 1 MASKNPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGS 60
Query: 61 AFHRIIPNFMCQXXXXXXXXXXXXESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQ 120
AFHRIIPNFMCQ ESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQ
Sbjct: 61 AFHRIIPNFMCQGGDFTRGNGTGGESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQ 120
Query: 121 FFICTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLADDHAN 179
FFICTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLADDHAN
Sbjct: 121 FFICTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLADDHAN 179
>Os02g0121300 Cyclophilin 2
Length = 172
Score = 239 bits (609), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 112/170 (65%), Positives = 133/170 (78%)
Query: 5 NPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHR 64
N +VFFD+ +G A AGR+VMEL+A VP+TAENFR LCTGEKG+G SGKPLHYKGS FHR
Sbjct: 3 NTRVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHR 62
Query: 65 IIPNFMCQXXXXXXXXXXXXESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFFIC 124
+IP FMCQ ESIYG++FADE FK +H PG+LSMANAGPNTNGSQFFIC
Sbjct: 63 VIPEFMCQGGDFTRGNGTGGESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFFIC 122
Query: 125 TTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLA 174
T +WLDGKHVVFG+VV+G VV+ +E+VGS G TA+ V+I DCGQL+
Sbjct: 123 TVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKPVVIADCGQLS 172
>Os06g0708500 Similar to Cyclophilin
Length = 249
Score = 218 bits (555), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/167 (64%), Positives = 123/167 (73%)
Query: 7 KVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRII 66
KV+FD+ I AGRVVM LF TVPKTAENFR LCTGEKG G SGK LH+KGSAFHRII
Sbjct: 81 KVYFDVEIDGKPAGRVVMGLFGKTVPKTAENFRALCTGEKGTGKSGKALHFKGSAFHRII 140
Query: 67 PNFMCQXXXXXXXXXXXXESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFFICTT 126
P+FM Q ESIYG +FADENFK++HTGPG+LSMANAG +TNGSQFFI T
Sbjct: 141 PSFMIQGGDFTLGDGRGGESIYGTKFADENFKIKHTGPGLLSMANAGRDTNGSQFFITTV 200
Query: 127 RTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQL 173
T+WLDGKHVVFGKV+ G VV K+E G SG +V+I D G+L
Sbjct: 201 TTSWLDGKHVVFGKVLSGMDVVYKIEAEGQQSGSPKSKVVIADSGEL 247
>AK062540
Length = 206
Score = 216 bits (549), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 112/178 (62%), Positives = 133/178 (74%), Gaps = 4/178 (2%)
Query: 2 ASKNPK----VFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHY 57
A K PK VFFDI IG AGRVVM L+ TVPKT ENFR LCTGEKG+G GKPLHY
Sbjct: 22 AGKGPKITNQVFFDITIGGKDAGRVVMGLYGKTVPKTVENFRALCTGEKGMGKKGKPLHY 81
Query: 58 KGSAFHRIIPNFMCQXXXXXXXXXXXXESIYGDRFADENFKLRHTGPGVLSMANAGPNTN 117
KGS FHRIIPNFM Q ESIYG++F DENFKL+HTG GVLSMANAG NTN
Sbjct: 82 KGSTFHRIIPNFMIQGGDFTDGNGMGGESIYGEKFEDENFKLKHTGEGVLSMANAGANTN 141
Query: 118 GSQFFICTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLAD 175
GSQFFICT +T+WLDG+HVVFG+V+ G +++ +E VGSG G +E+V+++D G+L +
Sbjct: 142 GSQFFICTVKTSWLDGRHVVFGRVISGMDIIKAVEAVGSGGGTPSEQVVVKDSGELPE 199
>Os06g0216800 Similar to Cyclophilin-40 (Expressed protein)
Length = 396
Score = 192 bits (489), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 104/179 (58%), Positives = 123/179 (68%), Gaps = 7/179 (3%)
Query: 4 KNPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGA-SGKPLHYKGSAF 62
KNP+ F D+ IG GR+V+EL+A VP+TAENFR LCTGEKG+GA +GK LHYKGS F
Sbjct: 24 KNPRCFMDVSIGGEIEGRIVIELYASVVPRTAENFRALCTGEKGVGAVTGKHLHYKGSCF 83
Query: 63 HRIIPNFMCQXXXXXXXXXXXXESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFF 122
HR+I FM Q ESIYG +F DENF L+H G+LSMAN+GPNTNGSQFF
Sbjct: 84 HRVIKGFMVQGGDITAGDGTGGESIYGLKFEDENFVLKHERKGMLSMANSGPNTNGSQFF 143
Query: 123 ICTTRTTWLDGKHVVFGKVVDGYTVVEKMEQ--VGSGSGGTAERVLIEDCGQL---ADD 176
I TTRT LDGKHVVFG+V+ G VV +E VG T++ V I DCG+L ADD
Sbjct: 144 ITTTRTPHLDGKHVVFGRVIKGMGVVRSVEHAPVGEADRPTSD-VEIVDCGELPEGADD 201
>Os10g0154700 Similar to Cyclophilin Dicyp-2
Length = 181
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 115/176 (65%), Gaps = 5/176 (2%)
Query: 2 ASKNPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKP-LHYKGS 60
+ NP+VF DI IG GRVV+EL AD VP TAENFR LCTGE+ G SGK LHYKGS
Sbjct: 7 SKSNPRVFLDIAIGGEWVGRVVIELLADKVPDTAENFRRLCTGERA-GRSGKSRLHYKGS 65
Query: 61 AFHRIIPNFMCQXXXXXXXXXXXXESIY---GDRFADENFKLRHTGPGVLSMANAGPNTN 117
AFHR++P FMCQ ES F DE F ++H GPGV+SMANAGPNTN
Sbjct: 66 AFHRVVPGFMCQGGDITAGNGTGGESALDGAARHFPDEGFAVKHDGPGVVSMANAGPNTN 125
Query: 118 GSQFFICTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQL 173
GSQFFI + WLDG+HV FG+VV G V +++ G+ SG T + V+I DCG L
Sbjct: 126 GSQFFITVDKAPWLDGRHVAFGRVVAGMGAVRAIDRTGTWSGKTVKPVVITDCGVL 181
>Os02g0761100 Similar to Cyclophilin-40 (Expressed protein)
Length = 403
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/174 (55%), Positives = 116/174 (66%), Gaps = 2/174 (1%)
Query: 4 KNPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGL-GASGKPLHYKGSAF 62
+NP+ + D+ IG GR+V+EL+A P+TAENFR LCTGEKG+ A+G PLHYKGS
Sbjct: 31 RNPRCYLDVSIGGDMEGRIVVELYASVAPRTAENFRALCTGEKGVSAATGVPLHYKGSCI 90
Query: 63 HRIIPNFMCQXXXXXXXXXXXXESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFF 122
HRI+ FM Q ESIYG F DENF L+H G+LSMANAGP+TNGSQFF
Sbjct: 91 HRIVKGFMVQGGDITAGDGTGGESIYGLNFEDENFVLKHERKGMLSMANAGPDTNGSQFF 150
Query: 123 ICTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSG-SGGTAERVLIEDCGQLAD 175
I TTRT LDGKHVVFG+V+ G VV ME V G S ++I DCG+L +
Sbjct: 151 ITTTRTPHLDGKHVVFGRVIKGMGVVRSMEHVSVGESDRPITDIVIVDCGELPE 204
>Os05g0103200 Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain
containing protein
Length = 250
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/171 (55%), Positives = 118/171 (69%), Gaps = 11/171 (6%)
Query: 7 KVFFDILIGKA---RAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFH 63
KV+FDI IG GRVV+ L+ D VP+TAENFR LCTGEKG G YKGS+FH
Sbjct: 84 KVYFDISIGNPVGKNVGRVVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSSFH 136
Query: 64 RIIPNFMCQXXXXXXXXXXXXESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFFI 123
R+I +FM Q +SIYG F DENFKL HTGPGV+SMANAGPNTNGSQFFI
Sbjct: 137 RVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLVHTGPGVVSMANAGPNTNGSQFFI 196
Query: 124 CTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGG-TAERVLIEDCGQL 173
CT +T WLDG+HVVFG+V++G +V+ +E + G ++V+I +CG+L
Sbjct: 197 CTVKTPWLDGRHVVFGQVIEGMDIVKMIESQETDRGDRPKKKVVISECGEL 247
>Os09g0537600 Similar to Cyclophilin-like protein (Single domain cyclophilin type
peptidyl- prolyl cis-trans isomerase)
Length = 215
Score = 183 bits (465), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 116/171 (67%), Gaps = 1/171 (0%)
Query: 7 KVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRII 66
+V+ D+ I GR+V+ L+ D VPKT NFR LCTGE+G+G GK LHYKGS FHRII
Sbjct: 39 RVYLDVEIDGQHIGRIVIGLYGDVVPKTVANFRALCTGEEGIGHKGKSLHYKGSRFHRII 98
Query: 67 PNFMCQXXXXXXXXXXXXESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFFICTT 126
P FM Q ESIYG F DENF ++HT PGV++MAN+GP++NGSQF+I T
Sbjct: 99 PGFMIQGGDIVRGDGKGSESIYGGTFPDENFIVKHTHPGVIAMANSGPDSNGSQFYITTI 158
Query: 127 RTTWLDGKHVVFGKVVDGYTVVEKME-QVGSGSGGTAERVLIEDCGQLADD 176
+T+WLDG+HVVFG+V+ G V +E G+ +G ++V+I D G++ +
Sbjct: 159 KTSWLDGEHVVFGRVIQGMDYVYAIEGGAGTYNGKPRKKVVITDSGEIPKE 209
>Os03g0811600 Similar to Peptidyl prolyl isomerase H
Length = 204
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 111/172 (64%), Gaps = 4/172 (2%)
Query: 4 KNPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFH 63
KNP VFFD+ IG AGR+ MELFAD VPKTAENFR CTGE SG P YKG FH
Sbjct: 35 KNPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHR--KSGLPQGYKGCQFH 92
Query: 64 RIIPNFMCQXXXXXXXXXXXXESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFFI 123
R+I +FM Q SIYG +F DENF +HTGPG+LSMAN+G N+NGSQFFI
Sbjct: 93 RVIKDFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMANSGVNSNGSQFFI 152
Query: 124 CTTRTTWLDGKHVVFGKVV-DGYTVVEKMEQVGSGSGGTAERV-LIEDCGQL 173
+ WLD KHVVFG+V+ DG V K+E V +G + +I +CG++
Sbjct: 153 TCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRPKLACVISECGEM 204
>Os08g0557500 Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of
Yarrowia lipolytica
Length = 154
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 78/145 (53%), Gaps = 12/145 (8%)
Query: 13 LIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQ 72
++ G + + L+ + PKT ENF C +Y FHR+I FM Q
Sbjct: 1 MVMHTSMGDIHLRLYPEECPKTVENFTTHCRNG----------YYDNLIFHRVIKGFMIQ 50
Query: 73 XXXXXXXXXXXXESIYGDRFADENFK-LRHTGPGVLSMANAGPNTNGSQFFICTTRTTWL 131
+SI+G F DE K LRH P LSMANAGPNTNGSQFFI T T WL
Sbjct: 51 TGDPLGDGTGG-QSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWL 109
Query: 132 DGKHVVFGKVVDGYTVVEKMEQVGS 156
D KH VFG+VV G VV+++E+V +
Sbjct: 110 DNKHTVFGRVVKGMDVVQQIEKVKT 134
>Os06g0130500 Similar to Cyclophilin-like protein PPIL3b
Length = 160
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 88/161 (54%), Gaps = 15/161 (9%)
Query: 20 GRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQXXXXXXX 79
G + E+F D P+TAENF LC ASG +Y G+ FHR I FM Q
Sbjct: 10 GDIKCEVFCDQAPRTAENFLALC-------ASG---YYDGTIFHRNIKGFMIQGGDPTGT 59
Query: 80 XXXXXESIYGDRFADE-NFKLRHTGPGVLSMANAGPNTNGSQFFICTTRTTWLDGKHVVF 138
SI+G +FADE L+H GV+SMAN+GPNTNGSQFFI + L+G + VF
Sbjct: 60 GKGGT-SIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVF 118
Query: 139 GKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLADDHAN 179
KV+ G+ V++ ME+ +G G +R L E HAN
Sbjct: 119 AKVIHGFEVLDLMEKAQTGPG---DRPLAEIRLNRVTIHAN 156
>Os08g0559400 Similar to Cyclophilin-like protein
Length = 164
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 75/136 (55%), Gaps = 12/136 (8%)
Query: 20 GRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQXXXXXXX 79
G +E++ PKT NF L +G +Y FHRII +F+ Q
Sbjct: 19 GAFTIEMYYKHAPKTCRNF--LELSRRG--------YYDNVIFHRIIKDFIVQGGDPTGT 68
Query: 80 XXXXXESIYGDRFADE-NFKLRHTGPGVLSMANAGPNTNGSQFFICTTRTTWLDGKHVVF 138
ESIYG +F DE +L+HTG G+LSMANAGPNTNGSQFFI LDGKH +F
Sbjct: 69 GRGG-ESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIF 127
Query: 139 GKVVDGYTVVEKMEQV 154
G+V G +V+++ V
Sbjct: 128 GRVSKGMEIVKRLGSV 143
>Os01g0582400 Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans
isomerase
Length = 499
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 70/126 (55%), Gaps = 13/126 (10%)
Query: 19 AGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQXXXXXX 78
AG + +EL+ PK NF LC +G +Y G+ FHR+I +F+ Q
Sbjct: 21 AGPLDIELWPKEAPKAVRNFVQLCL--EG--------YYDGTLFHRVIKSFLVQGGDPTG 70
Query: 79 XXXXXXESIYGDRFADE-NFKLRHTGPGVLSMANAG-PNTNGSQFFICTTRTTWLDGKHV 136
ESIYG FADE + +LR G+++ ANAG P++NGSQFFI R WLD K+
Sbjct: 71 SGTGG-ESIYGAPFADEFHTRLRFNHRGLVACANAGTPHSNGSQFFISLDRCDWLDKKNT 129
Query: 137 VFGKVV 142
+FGKV
Sbjct: 130 IFGKVT 135
>Os02g0111200
Length = 139
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
Query: 24 MELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQXXXXXXXXXXX 83
MEL+AD VP TAENFR L T KPLHYKG + P +
Sbjct: 1 MELYADLVPLTAENFRALYT--------KKPLHYKGLCLSQHYPRIHVEGRRLRQGPWHR 52
Query: 84 XESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFFICTTRTTWLDGKHVVFGKVVD 143
+ENF L H P + N N SQFF TR W DG +VVFG ++
Sbjct: 53 RRVHLRRHLPNENFLLPHDRPW---LPNGSAENNISQFF---TRVPWFDGNYVVFGCIIS 106
Query: 144 GYTVVEKME 152
G+ ++ +E
Sbjct: 107 GFHNLKAIE 115
>Os06g0670400
Length = 521
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 20/144 (13%)
Query: 20 GRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQXXXXXXX 79
G + ++L D P T +NF LC K +Y G FH+I +F+ Q
Sbjct: 10 GDIEVDLHTDMCPLTTKNFLKLC----------KMKYYNGCLFHKIEKDFLAQTGDSTGT 59
Query: 80 XX---XXXESIYGD--RFADENF--KLRHTGPGVLSMANAGPNTNGSQFFICTTR--TTW 130
+ +YGD RF D+ +LRH+ G ++MA+AG N N SQF+I T R +
Sbjct: 60 GAGGDSVYKFLYGDQARFFDDEIHPELRHSKMGTIAMASAGENCNASQFYI-TLRDGVDY 118
Query: 131 LDGKHVVFGKVVDGYTVVEKMEQV 154
LD KH VFG V +G+ + K+ +
Sbjct: 119 LDDKHTVFGMVAEGFDTITKINET 142
>Os06g0670500 Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans
isomerase
Length = 564
Score = 71.2 bits (173), Expect = 3e-13, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 20/143 (13%)
Query: 20 GRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQX---XXX 76
G + ++L D P T +NF LC K +Y G FH++ +F+ Q
Sbjct: 10 GDIEVDLHTDMCPLTTKNFLKLC----------KMKYYNGCLFHKVEKDFLAQTGDPTGT 59
Query: 77 XXXXXXXXESIYGD--RFADENFK--LRHTGPGVLSMANAGPNTNGSQFFICTTR--TTW 130
+ +YGD RF D+ + LRH+ G ++MA+AG N N SQF+I T R +
Sbjct: 60 GAGGDSVYKFLYGDQARFFDDEIRPDLRHSKKGTIAMASAGENCNASQFYI-TLRDDVDY 118
Query: 131 LDGKHVVFGKVVDGYTVVEKMEQ 153
LD KH VFG V +G+ + K+ +
Sbjct: 119 LDDKHTVFGMVAEGFDTLTKISE 141
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,263,607
Number of extensions: 256374
Number of successful extensions: 689
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 672
Number of HSP's successfully gapped: 17
Length of query: 179
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 85
Effective length of database: 12,127,685
Effective search space: 1030853225
Effective search space used: 1030853225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)