Os03g0811600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peptidyl prolyl isomerase H.
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Os03g0811600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peptidyl prolyl isomerase H.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.54 | 0.197 | 10.7 | 0.0492 | 0.0915 | -0.331 | 0.25 | -1.05 | -0.0801 | 4.93 | 27.91 | 1175 | -- | -- |
| 17.65 | 0.196 | 10.6 | 0.251 | 0.0732 | -0.482 | 0.19 | -- | -0.0433 | 4.36 | 27.41 | 1114 | -- | -- |
| 17.62 | 0.195 | 10.7 | 0.0572 | 0.0912 | -0.357 | -- | -1.02 | -0.0675 | 5.37 | 26.98 | 1140 | -- | -- |
| 17.76 | 0.196 | 10.6 | 0.256 | 0.0848 | -0.45 | -- | -- | -0.0485 | 5.87 | 27.82 | 1140 | -- | -- |
| 17.94 | 0.197 | 10.7 | 0.0872 | -- | -0.4 | -- | -0.916 | -0.0535 | -- | 26.56 | 1040 | -- | -- |
| 25.85 | 0.238 | 10.6 | 0.139 | 0.111 | -- | 0.00431 | -- | -0.0255 | 8.84 | -- | -- | -- | -- |
| 25.85 | 0.238 | 10.6 | 0.14 | 0.111 | -- | -- | -- | -0.0255 | 8.85 | -- | -- | -- | -- |
| 18.05 | 0.198 | 10.6 | 0.27 | -- | -0.487 | -- | -- | -0.0245 | -- | 26.89 | 1049 | -- | -- |
| 19.43 | 0.205 | 10.6 | -- | 0.0804 | -0.397 | -- | -- | -0.0888 | 5.93 | 28.47 | 1146 | -- | -- |
| 26.54 | 0.241 | 10.6 | 0.14 | -- | -- | -- | -- | -0.0247 | -- | -- | -- | -- | -- |
| 26.36 | 0.24 | 10.6 | -- | 0.111 | -- | -- | -- | -0.0411 | 8.75 | -- | -- | -- | -- |
| 19.79 | 0.207 | 10.6 | -- | -- | -0.42 | -- | -- | -0.0764 | -- | 28 | 1067 | -- | -- |
| 27.06 | 0.243 | 10.6 | -- | -- | -- | -- | -- | -0.0402 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.54 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 3 | 17.61 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 6 | 17.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 7 | 17.70 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 37 | 17.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 41 | 17.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 9 |
| 46 | 17.92 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 10 |
| 58 | 17.94 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 65 | 17.97 | temperature | 10 | 720 | > th | dose dependent | sin | 18 | NA |
| 70 | 17.98 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 111 | 18.09 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 16 |
| 118 | 18.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 127 | 18.12 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 141 | 18.14 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 16 |
| 151 | 18.16 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 160 | 18.19 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 204 | 18.24 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 224 | 18.27 | temperature | 30 | 720 | < th | dose dependent | sin | 18 | NA |
| 281 | 18.37 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 306 | 18.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 308 | 18.40 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 374 | 18.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 15 |
| 383 | 18.48 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 418 | 18.49 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 432 | 18.50 | temperature | 30 | 1440 | < th | dose independent | sin | 13 | NA |
| 439 | 18.50 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 505 | 18.54 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 5 |
| 525 | 18.54 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 546 | 18.55 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 677 | 18.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 706 | 18.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 720 | 18.60 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 825 | 18.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 832 | 18.61 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 1 |