BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0811600 Os03g0811600|AK071076
(204 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0811600 Similar to Peptidyl prolyl isomerase H 380 e-106
Os09g0571400 Cyclophilin 1 194 3e-50
Os02g0121300 Cyclophilin 2 190 5e-49
Os06g0708500 Similar to Cyclophilin 187 3e-48
Os06g0216800 Similar to Cyclophilin-40 (Expressed protein) 187 5e-48
Os05g0103200 Peptidyl-prolyl cis-trans isomerase, cyclophil... 187 6e-48
Os02g0761100 Similar to Cyclophilin-40 (Expressed protein) 186 9e-48
Os09g0537600 Similar to Cyclophilin-like protein (Single do... 175 2e-44
AK062540 175 2e-44
Os10g0154700 Similar to Cyclophilin Dicyp-2 160 8e-40
Os08g0557500 Similar to Yarrowia lipolytica chromosome C of... 123 8e-29
Os08g0559400 Similar to Cyclophilin-like protein 118 3e-27
Os06g0130500 Similar to Cyclophilin-like protein PPIL3b 112 2e-25
Os01g0582400 Similar to Multidomain cyclophilin type peptid... 110 6e-25
Os06g0670400 83 1e-16
Os06g0670500 Similar to Multidomain cyclophilin type peptid... 82 2e-16
>Os03g0811600 Similar to Peptidyl prolyl isomerase H
Length = 204
Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 25 VDWHLRPPNPKNPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQ 84
VDWHLRPPNPKNPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQ
Sbjct: 25 VDWHLRPPNPKNPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQ 84
Query: 85 GYKGCQFHRVIKDFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMANSGVN 144
GYKGCQFHRVIKDFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMANSGVN
Sbjct: 85 GYKGCQFHRVIKDFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMANSGVN 144
Query: 145 SNGSQFFITCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRPKLACVISECGEM 204
SNGSQFFITCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRPKLACVISECGEM
Sbjct: 145 SNGSQFFITCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRPKLACVISECGEM 204
>Os09g0571400 Cyclophilin 1
Length = 179
Score = 194 bits (494), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 121/172 (70%), Gaps = 4/172 (2%)
Query: 35 KNPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHR--KSGLPQGYKGCQFH 92
KNP VFFD+ IG AGR+ MELFAD VPKTAENFR CTGE SG P YKG FH
Sbjct: 4 KNPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFH 63
Query: 93 RVIKDFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMANSGVNSNGSQFFI 152
R+I +FM QGGD+ +G+GTG SIYG +F DENF +HTGPG+LSMAN+G N+NGSQFFI
Sbjct: 64 RIIPNFMCQGGDFTRGNGTGGESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFFI 123
Query: 153 TCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRPKLACVISECGEM 204
+ WLD KHVVFG+V+ DG V K+E V +G + +I +CG++
Sbjct: 124 CTTRTTWLDGKHVVFGKVV-DGYTVVEKMEQVGSGSGGTAERV-LIEDCGQL 173
>Os02g0121300 Cyclophilin 2
Length = 172
Score = 190 bits (483), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 121/173 (69%), Gaps = 8/173 (4%)
Query: 36 NPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHR--KSGLPQGYKGCQFHR 93
N VFFD+T+G PAGRI MEL+A VP+TAENFR CTGE KSG P YKG FHR
Sbjct: 3 NTRVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHR 62
Query: 94 VIKDFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMANSGVNSNGSQFFIT 153
VI +FM QGGD+ +G+GTG SIYG KF DE F KH PG+LSMAN+G N+NGSQFFI
Sbjct: 63 VIPEFMCQGGDFTRGNGTGGESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFFIC 122
Query: 154 CAKCEWLDNKHVVFGRVLGDGMLAVRKIENVAT--GPNNRPKLACVISECGEM 204
C WLD KHVVFGRV+ +GM V+ IE V + G +P VI++CG++
Sbjct: 123 TVPCSWLDGKHVVFGRVV-EGMDVVKAIEKVGSRGGSTAKP---VVIADCGQL 171
>Os06g0708500 Similar to Cyclophilin
Length = 249
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/169 (60%), Positives = 115/169 (68%), Gaps = 6/169 (3%)
Query: 39 VFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHR--KSGLPQGYKGCQFHRVIK 96
V+FDV I PAGR+ M LF VPKTAENFR CTGE KSG +KG FHR+I
Sbjct: 82 VYFDVEIDGKPAGRVVMGLFGKTVPKTAENFRALCTGEKGTGKSGKALHFKGSAFHRIIP 141
Query: 97 DFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMANSGVNSNGSQFFITCAK 156
FMIQGGD+ GDG G SIYGTKF DENF KHTGPGLLSMAN+G ++NGSQFFIT
Sbjct: 142 SFMIQGGDFTLGDGRGGESIYGTKFADENFKIKHTGPGLLSMANAGRDTNGSQFFITTVT 201
Query: 157 CEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNN-RPKLACVISECGEM 204
WLD KHVVFG+VL GM V KIE A G + PK VI++ GE+
Sbjct: 202 TSWLDGKHVVFGKVL-SGMDVVYKIE--AEGQQSGSPKSKVVIADSGEL 247
>Os06g0216800 Similar to Cyclophilin-40 (Expressed protein)
Length = 396
Score = 187 bits (475), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 98/173 (56%), Positives = 116/173 (67%), Gaps = 4/173 (2%)
Query: 35 KNPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEH---RKSGLPQGYKGCQF 91
KNP F DV+IG GRI +EL+A +VP+TAENFR CTGE +G YKG F
Sbjct: 24 KNPRCFMDVSIGGEIEGRIVIELYASVVPRTAENFRALCTGEKGVGAVTGKHLHYKGSCF 83
Query: 92 HRVIKDFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMANSGVNSNGSQFF 151
HRVIK FM+QGGD GDGTG SIYG KF+DENF+ KH G+LSMANSG N+NGSQFF
Sbjct: 84 HRVIKGFMVQGGDITAGDGTGGESIYGLKFEDENFVLKHERKGMLSMANSGPNTNGSQFF 143
Query: 152 ITCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRPKLACVISECGEM 204
IT + LD KHVVFGRV+ GM VR +E+ G +RP I +CGE+
Sbjct: 144 ITTTRTPHLDGKHVVFGRVI-KGMGVVRSVEHAPVGEADRPTSDVEIVDCGEL 195
>Os05g0103200 Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain
containing protein
Length = 250
Score = 187 bits (474), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 98/169 (57%), Positives = 120/169 (71%), Gaps = 9/169 (5%)
Query: 39 VFFDVTIGS---IPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRVI 95
V+FD++IG+ GR+ + L+ D VP+TAENFR CTGE G GYKG FHRVI
Sbjct: 85 VYFDISIGNPVGKNVGRVVIGLYGDDVPQTAENFRALCTGEK---GF--GYKGSSFHRVI 139
Query: 96 KDFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMANSGVNSNGSQFFITCA 155
KDFMIQGGD+ KG+GTG SIYG F DENF HTGPG++SMAN+G N+NGSQFFI
Sbjct: 140 KDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLVHTGPGVVSMANAGPNTNGSQFFICTV 199
Query: 156 KCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRPKLACVISECGEM 204
K WLD +HVVFG+V+ +GM V+ IE+ T +RPK VISECGE+
Sbjct: 200 KTPWLDGRHVVFGQVI-EGMDIVKMIESQETDRGDRPKKKVVISECGEL 247
>Os02g0761100 Similar to Cyclophilin-40 (Expressed protein)
Length = 403
Score = 186 bits (472), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 92/173 (53%), Positives = 119/173 (68%), Gaps = 4/173 (2%)
Query: 35 KNPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEH---RKSGLPQGYKGCQF 91
+NP + DV+IG GRI +EL+A + P+TAENFR CTGE +G+P YKG
Sbjct: 31 RNPRCYLDVSIGGDMEGRIVVELYASVAPRTAENFRALCTGEKGVSAATGVPLHYKGSCI 90
Query: 92 HRVIKDFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMANSGVNSNGSQFF 151
HR++K FM+QGGD GDGTG SIYG F+DENF+ KH G+LSMAN+G ++NGSQFF
Sbjct: 91 HRIVKGFMVQGGDITAGDGTGGESIYGLNFEDENFVLKHERKGMLSMANAGPDTNGSQFF 150
Query: 152 ITCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRPKLACVISECGEM 204
IT + LD KHVVFGRV+ GM VR +E+V+ G ++RP VI +CGE+
Sbjct: 151 ITTTRTPHLDGKHVVFGRVI-KGMGVVRSMEHVSVGESDRPITDIVIVDCGEL 202
>Os09g0537600 Similar to Cyclophilin-like protein (Single domain cyclophilin type
peptidyl- prolyl cis-trans isomerase)
Length = 215
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/180 (52%), Positives = 116/180 (64%), Gaps = 8/180 (4%)
Query: 29 LRPPNPKNPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGE----HRKSGLPQ 84
+R P N V + DV I GRI + L+ D+VPKT NFR CTGE H+ L
Sbjct: 31 VRLPAVTNRV-YLDVEIDGQHIGRIVIGLYGDVVPKTVANFRALCTGEEGIGHKGKSLH- 88
Query: 85 GYKGCQFHRVIKDFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMANSGVN 144
YKG +FHR+I FMIQGGD ++GDG G SIYG F DENFI KHT PG+++MANSG +
Sbjct: 89 -YKGSRFHRIIPGFMIQGGDIVRGDGKGSESIYGGTFPDENFIVKHTHPGVIAMANSGPD 147
Query: 145 SNGSQFFITCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRPKLACVISECGEM 204
SNGSQF+IT K WLD +HVVFGRV+ GM V IE A N +P+ VI++ GE+
Sbjct: 148 SNGSQFYITTIKTSWLDGEHVVFGRVI-QGMDYVYAIEGGAGTYNGKPRKKVVITDSGEI 206
>AK062540
Length = 206
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/168 (54%), Positives = 111/168 (66%), Gaps = 4/168 (2%)
Query: 39 VFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGL--PQGYKGCQFHRVIK 96
VFFD+TIG AGR+ M L+ VPKT ENFR CTGE P YKG FHR+I
Sbjct: 32 VFFDITIGGKDAGRVVMGLYGKTVPKTVENFRALCTGEKGMGKKGKPLHYKGSTFHRIIP 91
Query: 97 DFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMANSGVNSNGSQFFITCAK 156
+FMIQGGD+ G+G G SIYG KF+DENF KHTG G+LSMAN+G N+NGSQFFI K
Sbjct: 92 NFMIQGGDFTDGNGMGGESIYGEKFEDENFKLKHTGEGVLSMANAGANTNGSQFFICTVK 151
Query: 157 CEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRPKLACVISECGEM 204
WLD +HVVFGRV+ GM ++ +E V +G P V+ + GE+
Sbjct: 152 TSWLDGRHVVFGRVI-SGMDIIKAVEAVGSG-GGTPSEQVVVKDSGEL 197
>Os10g0154700 Similar to Cyclophilin Dicyp-2
Length = 181
Score = 160 bits (404), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 108/175 (61%), Gaps = 7/175 (4%)
Query: 35 KNPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHR-KSGLPQ-GYKGCQFH 92
NP VF D+ IG GR+ +EL AD VP TAENFR+ CTGE +SG + YKG FH
Sbjct: 9 SNPRVFLDIAIGGEWVGRVVIELLADKVPDTAENFRRLCTGERAGRSGKSRLHYKGSAFH 68
Query: 93 RVIKDFMIQGGDYMKGDGTGCTSIY---GTKFDDENFIAKHTGPGLLSMANSGVNSNGSQ 149
RV+ FM QGGD G+GTG S F DE F KH GPG++SMAN+G N+NGSQ
Sbjct: 69 RVVPGFMCQGGDITAGNGTGGESALDGAARHFPDEGFAVKHDGPGVVSMANAGPNTNGSQ 128
Query: 150 FFITCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRPKLACVISECGEM 204
FFIT K WLD +HV FGRV+ GM AVR I+ T K VI++CG +
Sbjct: 129 FFITVDKAPWLDGRHVAFGRVVA-GMGAVRAIDRTGTWSGKTVK-PVVITDCGVL 181
>Os08g0557500 Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of
Yarrowia lipolytica
Length = 154
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 88/143 (61%), Gaps = 11/143 (7%)
Query: 51 GRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRVIKDFMIQGGDYMKGDG 110
G I + L+ + PKT ENF C + Y FHRVIK FMIQ GD + GDG
Sbjct: 8 GDIHLRLYPEECPKTVENFTTHCRNGY--------YDNLIFHRVIKGFMIQTGDPL-GDG 58
Query: 111 TGCTSIYGTKFDDENFIA-KHTGPGLLSMANSGVNSNGSQFFITCAKCEWLDNKHVVFGR 169
TG SI+G +F+DE + +H P LSMAN+G N+NGSQFFIT WLDNKH VFGR
Sbjct: 59 TGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGR 118
Query: 170 VLGDGMLAVRKIENVATGPNNRP 192
V+ GM V++IE V T N++P
Sbjct: 119 VV-KGMDVVQQIEKVKTDKNDKP 140
>Os08g0559400 Similar to Cyclophilin-like protein
Length = 164
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 93/158 (58%), Gaps = 16/158 (10%)
Query: 36 NPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRVI 95
P V + ++G+ +E++ PKT NF + + Y FHR+I
Sbjct: 9 TPEVTLETSMGAF-----TIEMYYKHAPKTCRNFLELSRRGY--------YDNVIFHRII 55
Query: 96 KDFMIQGGDYMKGDGTGCTSIYGTKFDDE-NFIAKHTGPGLLSMANSGVNSNGSQFFITC 154
KDF++QGGD G G G SIYG KF+DE KHTG G+LSMAN+G N+NGSQFFIT
Sbjct: 56 KDFIVQGGD-PTGTGRGGESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITL 114
Query: 155 AKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRP 192
A C+ LD KH +FGRV GM V+++ +V T ++RP
Sbjct: 115 APCQSLDGKHTIFGRV-SKGMEIVKRLGSVQTDKSDRP 151
>Os06g0130500 Similar to Cyclophilin-like protein PPIL3b
Length = 160
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 83/143 (58%), Gaps = 11/143 (7%)
Query: 51 GRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRVIKDFMIQGGDYMKGDG 110
G IK E+F D P+TAENF C + Y G FHR IK FMIQGGD G G
Sbjct: 10 GDIKCEVFCDQAPRTAENFLALCASGY--------YDGTIFHRNIKGFMIQGGD-PTGTG 60
Query: 111 TGCTSIYGTKFDDE-NFIAKHTGPGLLSMANSGVNSNGSQFFITCAKCEWLDNKHVVFGR 169
G TSI+G KF DE KH G++SMANSG N+NGSQFFIT AK L+ + VF +
Sbjct: 61 KGGTSIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVFAK 120
Query: 170 VLGDGMLAVRKIENVATGPNNRP 192
V+ G + +E TGP +RP
Sbjct: 121 VI-HGFEVLDLMEKAQTGPGDRP 142
>Os01g0582400 Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans
isomerase
Length = 499
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 90/166 (54%), Gaps = 18/166 (10%)
Query: 29 LRPPNPKNPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKG 88
L PP VV AG + +EL+ PK NF Q C L Y G
Sbjct: 7 LEPPTKGKVVV-------QTTAGPLDIELWPKEAPKAVRNFVQLC--------LEGYYDG 51
Query: 89 CQFHRVIKDFMIQGGDYMKGDGTGCTSIYGTKFDDE-NFIAKHTGPGLLSMANSGV-NSN 146
FHRVIK F++QGGD G GTG SIYG F DE + + GL++ AN+G +SN
Sbjct: 52 TLFHRVIKSFLVQGGDPT-GSGTGGESIYGAPFADEFHTRLRFNHRGLVACANAGTPHSN 110
Query: 147 GSQFFITCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRP 192
GSQFFI+ +C+WLD K+ +FG+V GD + + + ++ T ++RP
Sbjct: 111 GSQFFISLDRCDWLDKKNTIFGKVTGDSIFNLLALADIETDKDDRP 156
>Os06g0670400
Length = 521
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 19/151 (12%)
Query: 51 GRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRVIKDFMIQGGDYMKGDG 110
G I+++L D+ P T +NF + C ++ Y GC FH++ KDF+ Q GD G G
Sbjct: 10 GDIEVDLHTDMCPLTTKNFLKLCKMKY--------YNGCLFHKIEKDFLAQTGDST-GTG 60
Query: 111 TGCTSIY-------GTKFDDE-NFIAKHTGPGLLSMANSGVNSNGSQFFITCAK-CEWLD 161
G S+Y FDDE + +H+ G ++MA++G N N SQF+IT ++LD
Sbjct: 61 AGGDSVYKFLYGDQARFFDDEIHPELRHSKMGTIAMASAGENCNASQFYITLRDGVDYLD 120
Query: 162 NKHVVFGRVLGDGMLAVRKIENVATGPNNRP 192
+KH VFG ++ +G + KI RP
Sbjct: 121 DKHTVFG-MVAEGFDTITKINETYVDDKGRP 150
>Os06g0670500 Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans
isomerase
Length = 564
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 19/151 (12%)
Query: 51 GRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRVIKDFMIQGGDYMKGDG 110
G I+++L D+ P T +NF + C ++ Y GC FH+V KDF+ Q GD G G
Sbjct: 10 GDIEVDLHTDMCPLTTKNFLKLCKMKY--------YNGCLFHKVEKDFLAQTGDPT-GTG 60
Query: 111 TGCTSIY-------GTKFDDE-NFIAKHTGPGLLSMANSGVNSNGSQFFITCA-KCEWLD 161
G S+Y FDDE +H+ G ++MA++G N N SQF+IT ++LD
Sbjct: 61 AGGDSVYKFLYGDQARFFDDEIRPDLRHSKKGTIAMASAGENCNASQFYITLRDDVDYLD 120
Query: 162 NKHVVFGRVLGDGMLAVRKIENVATGPNNRP 192
+KH VFG ++ +G + KI RP
Sbjct: 121 DKHTVFG-MVAEGFDTLTKISETYVDDKGRP 150
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.141 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,398,794
Number of extensions: 328989
Number of successful extensions: 666
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 639
Number of HSP's successfully gapped: 16
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)