Os01g0582400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase.
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Os01g0582400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.08 | 0.211 | 11.5 | -1.12 | 0.445 | 0.365 | 0.402 | -4.12 | 0.0458 | 2.3 | 25.96 | 816 | -- | -- |
| 23.46 | 0.227 | 11.4 | -0.427 | 0.364 | -0.213 | 0.208 | -- | 0.203 | 1.8 | 25.96 | 816 | -- | -- |
| 20.55 | 0.211 | 11.5 | -1.1 | 0.451 | 0.376 | -- | -4.36 | 0.0531 | 2.3 | 26.21 | 732 | -- | -- |
| 23.6 | 0.228 | 11.4 | -0.432 | 0.363 | -0.237 | -- | -- | 0.199 | 1.69 | 26.4 | 1803 | -- | -- |
| 28.92 | 0.252 | 11.4 | -0.388 | -- | -0.522 | -- | -0.121 | 0.239 | -- | 24.89 | 956 | -- | -- |
| 24.13 | 0.23 | 11.4 | -0.456 | 0.436 | -- | 0.28 | -- | 0.194 | 2 | -- | -- | -- | -- |
| 24.42 | 0.231 | 11.4 | -0.464 | 0.436 | -- | -- | -- | 0.192 | 1.89 | -- | -- | -- | -- |
| 28.93 | 0.252 | 11.4 | -0.374 | -- | -0.531 | -- | -- | 0.243 | -- | 24.89 | 956 | -- | -- |
| 25.02 | 0.233 | 11.3 | -- | 0.442 | -0.322 | -- | -- | 0.374 | 1.88 | 25.23 | 46390 | -- | -- |
| 35.9 | 0.28 | 11.4 | -0.446 | -- | -- | -- | -- | 0.202 | -- | -- | -- | -- | -- |
| 30.1 | 0.257 | 11.4 | -- | 0.427 | -- | -- | -- | 0.244 | 1.86 | -- | -- | -- | -- |
| 32.47 | 0.266 | 11.3 | -- | -- | -0.595 | -- | -- | 0.284 | -- | 25.02 | 46417 | -- | -- |
| 41.14 | 0.299 | 11.4 | -- | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.98 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 11 |
| 3 | 20.05 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 9 |
| 6 | 20.21 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 12 | 20.26 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 14 | 20.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 18 | 11 |
| 15 | 20.27 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 20 | 20.28 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 34 | 20.31 | temperature | 25 | 270 | > th | dose dependent | sin | 12 | NA |
| 35 | 20.31 | temperature | 25 | 720 | > th | dose dependent | sin | 19 | NA |
| 56 | 20.33 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 77 | 20.36 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 2 |
| 98 | 20.38 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 108 | 20.39 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 21 |
| 118 | 20.40 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 145 | 20.40 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 156 | 20.41 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 171 | 20.43 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 205 | 20.48 | temperature | 25 | 90 | > th | dose independent | sin | 14 | NA |
| 262 | 20.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 18 | 8 |
| 281 | 20.61 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 23 |
| 310 | 20.66 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 6 |
| 337 | 20.70 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 1 |
| 400 | 20.77 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 411 | 20.78 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 9 | 14 |
| 419 | 20.79 | temperature | 30 | 720 | < th | dose independent | sin | 4 | NA |
| 436 | 20.82 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 16 |
| 444 | 20.84 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 23 |
| 509 | 20.92 | temperature | 30 | 720 | > th | dose independent | sin | 3 | NA |
| 519 | 20.92 | radiation | 20 | 30 | < th | dose dependent | rect. | 18 | 22 |
| 526 | 20.95 | temperature | 25 | 10 | > th | dose independent | rect. | 18 | 5 |
| 536 | 20.96 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 20 |
| 575 | 21.01 | wind | 3 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 650 | 21.11 | wind | 3 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 656 | 21.12 | humidity | 80 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 668 | 21.13 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 676 | 21.15 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 684 | 21.15 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 698 | 21.18 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 23 |
| 718 | 21.21 | humidity | 80 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 729 | 21.22 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 23 |
| 736 | 21.23 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 854 | 21.25 | wind | 3 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 863 | 21.26 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 15 |
| 884 | 21.29 | radiation | 10 | 4320 | < th | dose independent | rect. | 8 | 3 |
| 897 | 21.31 | radiation | 10 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 917 | 21.32 | humidity | 60 | 720 | < th | dose independent | rect. | 13 | 2 |
| 924 | 21.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 939 | 21.34 | radiation | 10 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 940 | 21.34 | radiation | 10 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 946 | 21.35 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 947 | 21.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 2 |
| 971 | 21.36 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 9 |