Os05g0103200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain containing protein.
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Os05g0103200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.81 | 0.357 | 14.6 | -1.75 | 1.19 | 0.817 | 0.914 | 2.31 | -0.903 | 21 | 30.65 | 209 | -- | -- |
| 63.85 | 0.372 | 14.6 | -1.74 | 1.16 | 0.682 | 0.483 | -- | -0.901 | 20.9 | 30 | 275 | -- | -- |
| 60.58 | 0.363 | 14.6 | -1.76 | 1.17 | 0.858 | -- | 2.13 | -0.899 | 21 | 30.88 | 223 | -- | -- |
| 64.69 | 0.375 | 14.6 | -1.79 | 1.15 | 0.693 | -- | -- | -0.898 | 20.9 | 29.53 | 269 | -- | -- |
| 82.89 | 0.424 | 14.6 | -1.92 | -- | 1.15 | -- | 0.918 | -0.982 | -- | 0.03365 | 897 | -- | -- |
| 69.69 | 0.391 | 14.6 | -1.77 | 1.16 | -- | 0.627 | -- | -0.859 | 20.2 | -- | -- | -- | -- |
| 70.89 | 0.394 | 14.6 | -1.79 | 1.15 | -- | -- | -- | -0.858 | 20.2 | -- | -- | -- | -- |
| 84.25 | 0.427 | 14.6 | -1.9 | -- | 1.3 | -- | -- | -1.02 | -- | -0.6511 | 902 | -- | -- |
| 123.85 | 0.518 | 14.6 | -- | 0.993 | 0.936 | -- | -- | -0.898 | 20.1 | 35.09 | 25493 | -- | -- |
| 144.32 | 0.561 | 14.6 | -1.8 | -- | -- | -- | -- | -0.872 | -- | -- | -- | -- | -- |
| 155.33 | 0.583 | 14.6 | -- | 1.17 | -- | -- | -- | -0.659 | 20.1 | -- | -- | -- | -- |
| 178.63 | 0.622 | 14.6 | -- | -- | 1.19 | -- | -- | -0.797 | -- | -46.25 | 872 | -- | -- |
| 229.69 | 0.707 | 14.5 | -- | -- | -- | -- | -- | -0.672 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.71 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 9 | 55.07 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 11 | 55.14 | temperature | 25.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 40 | 56.24 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 44 | 56.36 | radiation | 30.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 46 | 56.38 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 8 | 21 |
| 54 | 56.61 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 10 | 18 |
| 64 | 56.77 | radiation | 40.0 | 270 | < th | dose independent | rect. | 9 | 23 |
| 69 | 56.88 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 10 | 14 |
| 72 | 56.90 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 91 | 57.02 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 93 | 57.04 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 95 | 57.05 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 8 | 5 |
| 136 | 57.22 | atmosphere | 1000.0 | 30 | > th | dose independent | sin | 19 | NA |
| 143 | 57.25 | atmosphere | 1000.0 | 10 | < th | dose independent | sin | 19 | NA |
| 205 | 57.53 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 10 | 18 |
| 215 | 57.56 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 221 | 57.58 | radiation | 40.0 | 270 | > th | dose independent | sin | 8 | NA |
| 224 | 57.59 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 266 | 57.66 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 9 | 16 |
| 405 | 57.93 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 10 | 14 |
| 493 | 58.15 | atmosphere | 1005.0 | 10 | < th | dose dependent | sin | 19 | NA |
| 511 | 58.21 | radiation | 40.0 | 270 | > th | dose independent | rect. | 14 | 23 |
| 539 | 58.27 | radiation | 40.0 | 270 | < th | dose independent | sin | 5 | NA |
| 582 | 58.33 | radiation | 40.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 665 | 58.45 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 7 | 23 |
| 692 | 58.47 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 718 | 58.57 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 16 |
| 726 | 58.58 | temperature | 30.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 755 | 58.62 | radiation | 40.0 | 270 | > th | dose independent | rect. | 9 | 2 |
| 757 | 58.62 | radiation | 30.0 | 270 | > th | dose dependent | no | NA | NA |
| 906 | 58.66 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 5 |
| 913 | 58.67 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 925 | 58.71 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 21 | 1 |