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Os09g0537600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cyclophilin-like protein (Single domain cyclophilin type peptidyl- prolyl cis-trans isomerase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.02 (0.0199) R2 : 0.43
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.35 (0.0928) R2dE : 0.305 R2E : 0.374
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.245 (0.0442) R2dN8 : 0.0566 R2N8 : 0.126
σ : 0.369
deviance : 62.7
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.5
memory length : 7672
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.22 0.349 8.02 -0.376 0.3 -1.33 0.406 -0.93 0.244 16.6 1.619 4421 -- --
55.91 0.348 8.03 -0.541 0.324 -1.2 0.525 -- 0.211 16.3 1.86 4423 -- --
55.63 0.347 8.02 -0.356 0.295 -1.33 -- -0.964 0.253 16.5 1.68 4426 -- --
56.24 0.349 8.02 -0.544 0.0327 -1.44 -- -- 0.237 16.5 1.679 7650 -- --
57.22 0.352 8.01 -0.404 -- -1.4 -- -0.749 0.253 -- 1.83 4581 -- --
80.37 0.42 7.98 -0.213 0.415 -- 0.37 -- 0.458 15.2 -- -- -- --
80.81 0.421 7.98 -0.206 0.416 -- -- -- 0.46 15.1 -- -- -- --
56.07 0.349 8.04 -0.549 -- -1.51 -- -- 0.182 -- 1.786 7669 -- --
61.57 0.365 8.03 -- 0.227 -1.26 -- -- 0.307 10.8 2.262 7848 -- --
90.7 0.445 7.98 -0.223 -- -- -- -- 0.449 -- -- -- -- --
81.93 0.423 7.97 -- 0.42 -- -- -- 0.483 15.1 -- -- -- --
62.7 0.369 8.02 -- -- -1.35 -- -- 0.245 -- 2.5 7672 -- --
92.02 0.448 7.97 -- -- -- -- -- 0.474 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 53.28 radiation 1 14400 > th dose dependent rect. 18 1
12 53.84 humidity 80 43200 > th dose dependent rect. 9 1
13 53.94 humidity 90 43200 < th dose independent rect. 8 1
14 53.95 radiation 20 14400 > th dose dependent rect. 6 2
29 54.07 radiation 40 4320 < th dose dependent rect. 18 3
30 54.07 radiation 1 4320 < th dose dependent rect. 18 16
31 54.08 radiation 1 14400 < th dose independent rect. 18 15
34 54.18 humidity 80 43200 > th dose independent rect. 10 1
36 54.19 wind 9 43200 > th dose dependent rect. 18 2
37 54.20 humidity 90 43200 < th dose independent rect. 5 5
38 54.22 radiation 30 14400 < th dose independent rect. 7 1
39 54.22 radiation 1 14400 < th dose independent rect. 17 18
48 54.32 radiation 30 14400 < th dose independent rect. 5 3
49 54.32 humidity 60 43200 > th dose independent rect. 14 10
53 54.33 humidity 80 43200 > th dose dependent rect. 8 3
58 54.34 radiation 30 14400 < th dose independent rect. 17 15
62 54.35 radiation 1 4320 < th dose dependent rect. 16 19
71 54.42 radiation 1 4320 < th dose dependent sin 10 NA
72 54.42 radiation 40 43200 < th dose dependent rect. 18 3
78 54.45 humidity 60 43200 < th dose independent rect. 14 10
80 54.46 humidity 90 43200 < th dose independent rect. 5 7
82 54.47 radiation 10 14400 < th dose independent rect. 17 4
90 54.49 humidity 60 43200 > th dose independent rect. 15 6
100 54.52 humidity 80 43200 < th dose independent rect. 10 1
109 54.53 radiation 1 14400 > th dose independent rect. 17 16
113 54.55 radiation 30 14400 > th dose independent rect. 7 1
133 54.56 radiation 1 14400 > th dose independent rect. 17 18
147 54.61 radiation 1 14400 < th dose independent sin 11 NA
157 54.64 humidity 90 43200 > th dose independent rect. 8 1
161 54.64 humidity 70 43200 < th dose dependent rect. 17 1
174 54.68 humidity 60 43200 > th dose independent rect. 16 3
177 54.68 radiation 40 14400 < th dose independent rect. 15 18
203 54.73 radiation 1 14400 < th dose dependent rect. 23 10
227 54.76 radiation 1 14400 < th dose dependent rect. 4 5
246 54.79 wind 5 43200 < th dose independent rect. 5 1
247 54.79 humidity 60 43200 < th dose independent rect. 16 3
252 54.79 humidity 60 43200 > th dose independent rect. 13 21
296 54.83 humidity 60 43200 > th dose independent sin 16 NA
321 54.86 humidity 90 43200 > th dose independent rect. 6 1
322 54.86 radiation 1 14400 < th dose independent rect. 5 4
327 54.87 radiation 10 43200 > th dose independent rect. 5 1
362 54.90 humidity 70 43200 < th dose independent rect. 18 3
363 54.90 radiation 1 14400 > th dose independent rect. 5 4
375 54.91 wind 9 43200 > th dose independent rect. 18 2
376 54.91 wind 9 43200 < th dose independent rect. 18 2
450 54.98 wind 5 43200 > th dose independent rect. 5 1
457 54.99 radiation 1 14400 < th dose independent rect. 6 15
465 55.00 radiation 1 14400 > th dose independent sin 11 NA
468 55.00 radiation 1 14400 < th dose independent rect. 6 13
486 55.00 radiation 1 14400 < th dose independent rect. 10 23
494 55.01 radiation 1 14400 < th dose independent rect. 5 7
509 55.02 humidity 90 43200 > th dose independent rect. 6 3
511 55.02 humidity 60 43200 > th dose independent rect. 6 18
534 55.04 radiation 1 14400 > th dose independent rect. 5 7
553 55.05 humidity 60 43200 < th dose independent sin 16 NA
554 55.05 radiation 1 14400 < th dose independent no NA NA
592 55.05 radiation 1 14400 < th dose independent rect. 20 23
616 55.07 humidity 90 14400 < th dose independent rect. 21 10
687 55.12 wind 9 43200 < th dose independent rect. 22 1
746 55.15 wind 5 43200 > th dose dependent rect. 5 1
779 55.17 humidity 60 43200 > th dose independent rect. 22 21
792 55.17 radiation 1 14400 < th dose dependent rect. 4 22
793 55.17 radiation 1 14400 < th dose dependent rect. 23 22
795 55.17 radiation 1 14400 < th dose dependent rect. 7 23
815 55.18 humidity 60 43200 < th dose independent rect. 13 21
822 55.18 radiation 1 14400 < th dose dependent no NA NA
831 55.18 radiation 1 14400 < th dose dependent rect. 1 20
841 55.18 radiation 1 14400 < th dose dependent rect. 20 23
845 55.19 humidity 90 43200 > th dose independent rect. 6 6
870 55.19 radiation 1 14400 < th dose dependent rect. 4 16
921 55.20 radiation 1 14400 < th dose dependent rect. 10 23
955 55.22 humidity 60 43200 > th dose independent no NA NA
971 55.22 radiation 1 14400 < th dose dependent rect. 16 10