Os08g0557500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0557500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.93 | 0.293 | 9.09 | 0.305 | 0.122 | -1.19 | 0.269 | 0.506 | -0.0309 | 14.3 | 29.7 | 84 | -- | -- |
| 39.16 | 0.291 | 9.08 | 0.388 | 0.102 | -1.21 | 0.0956 | -- | -0.00858 | 14.1 | 29.6 | 78 | -- | -- |
| 39.08 | 0.291 | 9.09 | 0.347 | 0.119 | -1.21 | -- | 0.31 | -0.0236 | 13.5 | 29.71 | 79 | -- | -- |
| 39.17 | 0.291 | 9.09 | 0.383 | 0.113 | -1.22 | -- | -- | -0.0133 | 13.1 | 29.6 | 86 | -- | -- |
| 39.64 | 0.293 | 9.09 | 0.346 | -- | -1.3 | -- | 0.231 | -0.0419 | -- | 29.79 | 71 | -- | -- |
| 58.53 | 0.359 | 9.03 | 0.686 | 0.502 | -- | 0.277 | -- | 0.229 | 14.6 | -- | -- | -- | -- |
| 58.8 | 0.359 | 9.03 | 0.693 | 0.502 | -- | -- | -- | 0.231 | 14.5 | -- | -- | -- | -- |
| 39.7 | 0.293 | 9.09 | 0.368 | -- | -1.31 | -- | -- | -0.0317 | -- | 29.7 | 68 | -- | -- |
| 42.79 | 0.305 | 9.1 | -- | 0.0653 | -1.37 | -- | -- | -0.0838 | 11.9 | 29.5 | 89 | -- | -- |
| 73.64 | 0.401 | 9.03 | 0.672 | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
| 71.46 | 0.395 | 9.05 | -- | 0.489 | -- | -- | -- | 0.153 | 14.5 | -- | -- | -- | -- |
| 43 | 0.305 | 9.1 | -- | -- | -1.42 | -- | -- | -0.0924 | -- | 29.6 | 78 | -- | -- |
| 85.54 | 0.432 | 9.05 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.10 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 12 | 36.54 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 13 | 36.54 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 27 | 37.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 69 | 38.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 77 | 38.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 82 | 38.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 89 | 38.54 | temperature | 15 | 90 | > th | dose dependent | sin | 5 | NA |
| 94 | 38.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 98 | 38.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 100 | 38.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 119 | 38.98 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 123 | 39.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 131 | 39.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 133 | 39.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 137 | 39.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 144 | 39.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 160 | 39.32 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 162 | 39.34 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 163 | 39.34 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 18 |
| 165 | 39.35 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 170 | 39.40 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 240 | 39.84 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 248 | 39.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 307 | 40.34 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 330 | 40.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 341 | 40.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 359 | 40.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 391 | 40.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 21 |
| 397 | 40.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 440 | 41.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 463 | 41.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 487 | 41.30 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 493 | 41.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 510 | 41.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 640 | 41.86 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 643 | 41.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 671 | 41.96 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 720 | 42.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 732 | 42.11 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 750 | 42.14 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 762 | 42.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 816 | 42.28 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 847 | 42.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 888 | 42.42 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 948 | 42.50 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 965 | 42.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 984 | 42.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |