Os06g0130500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyclophilin-like protein PPIL3b.
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Os06g0130500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cyclophilin-like protein PPIL3b.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.2 | 0.221 | 11 | 0.455 | 0.426 | 0.463 | -0.892 | 0.0155 | 0.304 | 22.1 | 20.7 | 845 | -- | -- |
| 22.2 | 0.219 | 11 | 0.454 | 0.425 | 0.457 | -0.89 | -- | 0.302 | 22.1 | 20.8 | 844 | -- | -- |
| 24.94 | 0.233 | 11 | 0.415 | 0.435 | 0.429 | -- | -0.337 | 0.296 | 22 | 20.7 | 823 | -- | -- |
| 25.17 | 0.234 | 11 | 0.489 | 0.428 | 0.447 | -- | -- | 0.291 | 22 | 21.27 | 856 | -- | -- |
| 35.36 | 0.277 | 11 | 0.453 | -- | 0.554 | -- | -0.232 | 0.276 | -- | 21.21 | 809 | -- | -- |
| 28.39 | 0.25 | 10.9 | 0.627 | 0.497 | -- | -0.908 | -- | 0.413 | 22.2 | -- | -- | -- | -- |
| 31.68 | 0.264 | 10.9 | 0.664 | 0.504 | -- | -- | -- | 0.415 | 22.1 | -- | -- | -- | -- |
| 35.51 | 0.278 | 11 | 0.465 | -- | 0.572 | -- | -- | 0.262 | -- | 21.2 | 831 | -- | -- |
| 30.62 | 0.258 | 11 | -- | 0.427 | 0.624 | -- | -- | 0.218 | 21.8 | 20.7 | 978 | -- | -- |
| 47 | 0.32 | 10.9 | 0.671 | -- | -- | -- | -- | 0.416 | -- | -- | -- | -- | -- |
| 43.29 | 0.308 | 11 | -- | 0.507 | -- | -- | -- | 0.341 | 22.2 | -- | -- | -- | -- |
| 40.37 | 0.296 | 11 | -- | -- | 0.725 | -- | -- | 0.196 | -- | 20.83 | 846 | -- | -- |
| 58.86 | 0.358 | 10.9 | -- | -- | -- | -- | -- | 0.342 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.02 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 2 | 22.12 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 5 | 22.24 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 21 |
| 6 | 22.28 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 19 | 22.38 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 37 | 22.47 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 44 | 22.51 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 45 | 22.51 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 53 | 22.52 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 18 |
| 133 | 22.71 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 134 | 22.71 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 145 | 22.73 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 19 |
| 157 | 22.74 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 168 | 22.76 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 15 |
| 175 | 22.76 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 216 | 22.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 217 | 22.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 12 |
| 232 | 22.83 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 244 | 22.83 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 268 | 22.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 17 |
| 289 | 22.87 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 351 | 22.93 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 384 | 22.96 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 535 | 23.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 638 | 23.30 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 721 | 23.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 768 | 23.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 773 | 23.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 779 | 23.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 845 | 23.59 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 949 | 23.69 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 983 | 23.71 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |