BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0130500 Os06g0130500|AK105360
(160 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0130500 Similar to Cyclophilin-like protein PPIL3b 309 6e-85
Os08g0557500 Similar to Yarrowia lipolytica chromosome C of... 152 1e-37
Os08g0559400 Similar to Cyclophilin-like protein 143 6e-35
Os06g0216800 Similar to Cyclophilin-40 (Expressed protein) 124 4e-29
Os02g0761100 Similar to Cyclophilin-40 (Expressed protein) 119 8e-28
Os05g0103200 Peptidyl-prolyl cis-trans isomerase, cyclophil... 118 2e-27
Os01g0582400 Similar to Multidomain cyclophilin type peptid... 114 4e-26
Os09g0571400 Cyclophilin 1 108 2e-24
Os06g0670500 Similar to Multidomain cyclophilin type peptid... 101 2e-22
Os02g0121300 Cyclophilin 2 100 3e-22
AK062540 97 5e-21
Os06g0670400 96 8e-21
Os03g0811600 Similar to Peptidyl prolyl isomerase H 96 1e-20
Os10g0154700 Similar to Cyclophilin Dicyp-2 91 4e-19
Os06g0708500 Similar to Cyclophilin 91 4e-19
Os09g0537600 Similar to Cyclophilin-like protein (Single do... 90 8e-19
Os07g0476500 Peptidyl-prolyl cis-trans isomerase, cyclophil... 67 5e-12
>Os06g0130500 Similar to Cyclophilin-like protein PPIL3b
Length = 160
Score = 309 bits (791), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 148/160 (92%), Positives = 148/160 (92%)
Query: 1 MSVTLHTNLGDIKCEVFCDQAPRTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXX 60
MSVTLHTNLGDIKCEVFCDQAPRTAENFLALCASGYYDGTIFHRNIKGFMIQ
Sbjct: 1 MSVTLHTNLGDIKCEVFCDQAPRTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTG 60
Query: 61 XXXXSIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVFAK 120
SIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVFAK
Sbjct: 61 KGGTSIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVFAK 120
Query: 121 VIHGFEVLDLMEKAQTGPGDRPLAEIRLNRVTIHANPLAN 160
VIHGFEVLDLMEKAQTGPGDRPLAEIRLNRVTIHANPLAN
Sbjct: 121 VIHGFEVLDLMEKAQTGPGDRPLAEIRLNRVTIHANPLAN 160
>Os08g0557500 Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of
Yarrowia lipolytica
Length = 154
Score = 152 bits (383), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 99/151 (65%)
Query: 3 VTLHTNLGDIKCEVFCDQAPRTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXX 62
+ +HT++GDI ++ ++ P+T ENF C +GYYD IFHR IKGFMIQ
Sbjct: 1 MVMHTSMGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTG 60
Query: 63 XXSIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVFAKVI 122
SIWG++F DEF +SL+H+ +SMAN+GPNTNGSQFFIT P L+ +TVF +V+
Sbjct: 61 GQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVV 120
Query: 123 HGFEVLDLMEKAQTGPGDRPLAEIRLNRVTI 153
G +V+ +EK +T D+P ++++ VT+
Sbjct: 121 KGMDVVQQIEKVKTDKNDKPYQDVKILNVTV 151
>Os08g0559400 Similar to Cyclophilin-like protein
Length = 164
Score = 143 bits (360), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 91/151 (60%)
Query: 3 VTLHTNLGDIKCEVFCDQAPRTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXX 62
VTL T++G E++ AP+T NFL L GYYD IFHR IK F++Q
Sbjct: 12 VTLETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIVQGGDPTGTGRG 71
Query: 63 XXSIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVFAKVI 122
SI+G KF DE R LKH G++SMAN+GPNTNGSQFFIT A L+G +T+F +V
Sbjct: 72 GESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIFGRVS 131
Query: 123 HGFEVLDLMEKAQTGPGDRPLAEIRLNRVTI 153
G E++ + QT DRP+ E+++ R +
Sbjct: 132 KGMEIVKRLGSVQTDKSDRPIHEVKILRTVV 162
>Os06g0216800 Similar to Cyclophilin-40 (Expressed protein)
Length = 396
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 92/161 (57%), Gaps = 14/161 (8%)
Query: 1 MSVTLHTNL-GDIKCEVFCDQAPRTAENFLALCASG-----------YYDGTIFHRNIKG 48
M V++ + G I E++ PRTAENF ALC +Y G+ FHR IKG
Sbjct: 30 MDVSIGGEIEGRIVIELYASVVPRTAENFRALCTGEKGVGAVTGKHLHYKGSCFHRVIKG 89
Query: 49 FMIQXXX-XXXXXXXXXSIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAK 107
FM+Q SI+G KF DE LKH +G++SMANSGPNTNGSQFFIT +
Sbjct: 90 FMVQGGDITAGDGTGGESIYGLKFEDE-NFVLKHERKGMLSMANSGPNTNGSQFFITTTR 148
Query: 108 QPHLNGHYTVFAKVIHGFEVLDLMEKAQTGPGDRPLAEIRL 148
PHL+G + VF +VI G V+ +E A G DRP +++ +
Sbjct: 149 TPHLDGKHVVFGRVIKGMGVVRSVEHAPVGEADRPTSDVEI 189
>Os02g0761100 Similar to Cyclophilin-40 (Expressed protein)
Length = 403
Score = 119 bits (299), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 87/149 (58%), Gaps = 13/149 (8%)
Query: 10 GDIKCEVFCDQAPRTAENFLALC--------ASG---YYDGTIFHRNIKGFMIQXXXXXX 58
G I E++ APRTAENF ALC A+G +Y G+ HR +KGFM+Q
Sbjct: 47 GRIVVELYASVAPRTAENFRALCTGEKGVSAATGVPLHYKGSCIHRIVKGFMVQGGDITA 106
Query: 59 XXXXX-XSIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTV 117
SI+G F DE LKH +G++SMAN+GP+TNGSQFFIT + PHL+G + V
Sbjct: 107 GDGTGGESIYGLNFEDE-NFVLKHERKGMLSMANAGPDTNGSQFFITTTRTPHLDGKHVV 165
Query: 118 FAKVIHGFEVLDLMEKAQTGPGDRPLAEI 146
F +VI G V+ ME G DRP+ +I
Sbjct: 166 FGRVIKGMGVVRSMEHVSVGESDRPITDI 194
>Os05g0103200 Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain
containing protein
Length = 250
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 90/147 (61%), Gaps = 7/147 (4%)
Query: 8 NLGDIKCEVFCDQAPRTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXX-XXXXXXXX 63
N+G + ++ D P+TAENF ALC G+ Y G+ FHR IK FMIQ
Sbjct: 98 NVGRVVIGLYGDDVPQTAENFRALCTGEKGFGYKGSSFHRVIKDFMIQGGDFDKGNGTGG 157
Query: 64 XSIWGKKFADE-FRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVFAKVI 122
SI+G+ F DE F+ L H GV+SMAN+GPNTNGSQFFI K P L+G + VF +VI
Sbjct: 158 KSIYGRTFKDENFK--LVHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDGRHVVFGQVI 215
Query: 123 HGFEVLDLMEKAQTGPGDRPLAEIRLN 149
G +++ ++E +T GDRP ++ ++
Sbjct: 216 EGMDIVKMIESQETDRGDRPKKKVVIS 242
>Os01g0582400 Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans
isomerase
Length = 499
Score = 114 bits (284), Expect = 4e-26, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 91/159 (57%), Gaps = 4/159 (2%)
Query: 3 VTLHTNLGDIKCEVFCDQAPRTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXX 62
V + T G + E++ +AP+ NF+ LC GYYDGT+FHR IK F++Q
Sbjct: 15 VVVQTTAGPLDIELWPKEAPKAVRNFVQLCLEGYYDGTLFHRVIKSFLVQGGDPTGSGTG 74
Query: 63 XXSIWGKKFADEFRESLKHNARGVMSMANSG-PNTNGSQFFITYAKQPHLNGHYTVFAKV 121
SI+G FADEF L+ N RG+++ AN+G P++NGSQFFI+ + L+ T+F KV
Sbjct: 75 GESIYGAPFADEFHTRLRFNHRGLVACANAGTPHSNGSQFFISLDRCDWLDKKNTIFGKV 134
Query: 122 IHGFEVLDLMEKA--QTGPGDRPLAEIRLNRVTIHANPL 158
G + +L+ A +T DRP+ ++ V + NP
Sbjct: 135 T-GDSIFNLLALADIETDKDDRPVYPQKILSVEVLWNPF 172
>Os09g0571400 Cyclophilin 1
Length = 179
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 90/162 (55%), Gaps = 17/162 (10%)
Query: 10 GDIKCEVFCDQAPRTAENFLALC-------ASG---YYDGTIFHRNIKGFMIQXXX-XXX 58
G + E+F D P+TAENF LC ASG +Y G+ FHR I FM Q
Sbjct: 20 GRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQGGDFTRG 79
Query: 59 XXXXXXSIWGKKFADE-FRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTV 117
SI+G +FADE F+ L+H GV+SMAN+GPNTNGSQFFI + L+G + V
Sbjct: 80 NGTGGESIYGDRFADENFK--LRHTGPGVLSMANAGPNTNGSQFFICTTRTTWLDGKHVV 137
Query: 118 FAKVIHGFEVLDLMEKAQTGPG---DRPLAEIRLNRVTIHAN 156
F KV+ G+ V++ ME+ +G G +R L E HAN
Sbjct: 138 FGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLADDHAN 179
>Os06g0670500 Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans
isomerase
Length = 564
Score = 101 bits (252), Expect = 2e-22, Method: Composition-based stats.
Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 8/166 (4%)
Query: 1 MSVTLHTNLGDIKCEVFCDQAPRTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXX 60
MSV + T++GDI+ ++ D P T +NFL LC YY+G +FH+ K F+ Q
Sbjct: 1 MSVLIVTSVGDIEVDLHTDMCPLTTKNFLKLCKMKYYNGCLFHKVEKDFLAQTGDPTGTG 60
Query: 61 XXXXSIW-------GKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQ-PHLN 112
S++ + F DE R L+H+ +G ++MA++G N N SQF+IT +L+
Sbjct: 61 AGGDSVYKFLYGDQARFFDDEIRPDLRHSKKGTIAMASAGENCNASQFYITLRDDVDYLD 120
Query: 113 GHYTVFAKVIHGFEVLDLMEKAQTGPGDRPLAEIRLNRVTIHANPL 158
+TVF V GF+ L + + RP +IR+ + +P
Sbjct: 121 DKHTVFGMVAEGFDTLTKISETYVDDKGRPFKDIRIKHTYVLDDPF 166
>Os02g0121300 Cyclophilin 2
Length = 172
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 79/138 (57%), Gaps = 12/138 (8%)
Query: 10 GDIKCEVFCDQAPRTAENFLALCA-------SG---YYDGTIFHRNIKGFMIQXXX-XXX 58
G I E++ PRTAENF ALC SG +Y G+ FHR I FM Q
Sbjct: 18 GRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRG 77
Query: 59 XXXXXXSIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVF 118
SI+G+KFADE + KH++ G++SMAN+GPNTNGSQFFI L+G + VF
Sbjct: 78 NGTGGESIYGEKFADEVFK-FKHDSPGILSMANAGPNTNGSQFFICTVPCSWLDGKHVVF 136
Query: 119 AKVIHGFEVLDLMEKAQT 136
+V+ G +V+ +EK +
Sbjct: 137 GRVVEGMDVVKAIEKVGS 154
>AK062540
Length = 206
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 77/144 (53%), Gaps = 14/144 (9%)
Query: 8 NLGDIKCEVFCDQAPRTAENFLALCASG----------YYDGTIFHRNIKGFMIQXXX-X 56
+ G + ++ P+T ENF ALC +Y G+ FHR I FMIQ
Sbjct: 42 DAGRVVMGLYGKTVPKTVENFRALCTGEKGMGKKGKPLHYKGSTFHRIIPNFMIQGGDFT 101
Query: 57 XXXXXXXXSIWGKKFADE-FRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHY 115
SI+G+KF DE F+ LKH GV+SMAN+G NTNGSQFFI K L+G +
Sbjct: 102 DGNGMGGESIYGEKFEDENFK--LKHTGEGVLSMANAGANTNGSQFFICTVKTSWLDGRH 159
Query: 116 TVFAKVIHGFEVLDLMEKAQTGPG 139
VF +VI G +++ +E +G G
Sbjct: 160 VVFGRVISGMDIIKAVEAVGSGGG 183
>Os06g0670400
Length = 521
Score = 96.3 bits (238), Expect = 8e-21, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 8/166 (4%)
Query: 1 MSVTLHTNLGDIKCEVFCDQAPRTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXX 60
MSV + T++GDI+ ++ D P T +NFL LC YY+G +FH+ K F+ Q
Sbjct: 1 MSVLIVTSVGDIEVDLHTDMCPLTTKNFLKLCKMKYYNGCLFHKIEKDFLAQTGDSTGTG 60
Query: 61 XXXXSIW-------GKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQ-PHLN 112
S++ + F DE L+H+ G ++MA++G N N SQF+IT +L+
Sbjct: 61 AGGDSVYKFLYGDQARFFDDEIHPELRHSKMGTIAMASAGENCNASQFYITLRDGVDYLD 120
Query: 113 GHYTVFAKVIHGFEVLDLMEKAQTGPGDRPLAEIRLNRVTIHANPL 158
+TVF V GF+ + + + RP +IR+ + +P
Sbjct: 121 DKHTVFGMVAEGFDTITKINETYVDDKGRPFKDIRIRHTYVLDDPF 166
>Os03g0811600 Similar to Peptidyl prolyl isomerase H
Length = 204
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 76/143 (53%), Gaps = 11/143 (7%)
Query: 10 GDIKCEVFCDQAPRTAENFLALCASGY--------YDGTIFHRNIKGFMIQXXX-XXXXX 60
G IK E+F D P+TAENF C + Y G FHR IK FMIQ
Sbjct: 51 GRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRVIKDFMIQGGDYMKGDG 110
Query: 61 XXXXSIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVFAK 120
SI+G KF DE KH G++SMANSG N+NGSQFFIT AK L+ + VF +
Sbjct: 111 TGCTSIYGTKFDDE-NFIAKHTGPGLLSMANSGVNSNGSQFFITCAKCEWLDNKHVVFGR 169
Query: 121 VI-HGFEVLDLMEKAQTGPGDRP 142
V+ G + +E TGP +RP
Sbjct: 170 VLGDGMLAVRKIENVATGPNNRP 192
>Os10g0154700 Similar to Cyclophilin Dicyp-2
Length = 181
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 13/144 (9%)
Query: 9 LGDIKCEVFCDQAPRTAENFLALCA------SG----YYDGTIFHRNIKGFMIQXXXXXX 58
+G + E+ D+ P TAENF LC SG +Y G+ FHR + GFM Q
Sbjct: 24 VGRVVIELLADKVPDTAENFRRLCTGERAGRSGKSRLHYKGSAFHRVVPGFMCQGGDITA 83
Query: 59 XXXXXXSIWGKKFADEFRE---SLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHY 115
A F + ++KH+ GV+SMAN+GPNTNGSQFFIT K P L+G +
Sbjct: 84 GNGTGGESALDGAARHFPDEGFAVKHDGPGVVSMANAGPNTNGSQFFITVDKAPWLDGRH 143
Query: 116 TVFAKVIHGFEVLDLMEKAQTGPG 139
F +V+ G + +++ T G
Sbjct: 144 VAFGRVVAGMGAVRAIDRTGTWSG 167
>Os06g0708500 Similar to Cyclophilin
Length = 249
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 76/135 (56%), Gaps = 14/135 (10%)
Query: 10 GDIKCEVFCDQAPRTAENFLALCA-------SG---YYDGTIFHRNIKGFMIQXXX-XXX 58
G + +F P+TAENF ALC SG ++ G+ FHR I FMIQ
Sbjct: 94 GRVVMGLFGKTVPKTAENFRALCTGEKGTGKSGKALHFKGSAFHRIIPSFMIQGGDFTLG 153
Query: 59 XXXXXXSIWGKKFADE-FRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTV 117
SI+G KFADE F+ +KH G++SMAN+G +TNGSQFFIT L+G + V
Sbjct: 154 DGRGGESIYGTKFADENFK--IKHTGPGLLSMANAGRDTNGSQFFITTVTTSWLDGKHVV 211
Query: 118 FAKVIHGFEVLDLME 132
F KV+ G +V+ +E
Sbjct: 212 FGKVLSGMDVVYKIE 226
>Os09g0537600 Similar to Cyclophilin-like protein (Single domain cyclophilin type
peptidyl- prolyl cis-trans isomerase)
Length = 215
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 12/136 (8%)
Query: 8 NLGDIKCEVFCDQAPRTAENFLALCA----------SGYYDGTIFHRNIKGFMIQXXXXX 57
++G I ++ D P+T NF ALC S +Y G+ FHR I GFMIQ
Sbjct: 50 HIGRIVIGLYGDVVPKTVANFRALCTGEEGIGHKGKSLHYKGSRFHRIIPGFMIQGGDIV 109
Query: 58 XX-XXXXXSIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYT 116
SI+G F DE +KH GV++MANSGP++NGSQF+IT K L+G +
Sbjct: 110 RGDGKGSESIYGGTFPDE-NFIVKHTHPGVIAMANSGPDSNGSQFYITTIKTSWLDGEHV 168
Query: 117 VFAKVIHGFEVLDLME 132
VF +VI G + + +E
Sbjct: 169 VFGRVIQGMDYVYAIE 184
>Os07g0476500 Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain
containing protein
Length = 235
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 2/155 (1%)
Query: 5 LHTNLGDIKCEVFCDQAPRTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXX 64
+ T G I E++ D + + F++LC S ++ G F IK F+IQ
Sbjct: 83 IDTAKGSITIEIYKDASADVVDRFVSLCKSNHFKGMPFRHVIKNFVIQGGDFDFNGAAQE 142
Query: 65 SIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVFAKVIHG 124
I K + E S KH A + + N PN G FIT A P LN VF +VI+G
Sbjct: 143 WILKAKASGENALSPKHEAFMIGTTKN--PNNKGFDLFITTAPIPDLNDKLVVFGQVING 200
Query: 125 FEVLDLMEKAQTGPGDRPLAEIRLNRVTIHANPLA 159
+++ +E+ T +P I + +T+ L+
Sbjct: 201 QDIVQEIEEVDTDEHYQPKTPIGILNITLKQQALS 235
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,112,684
Number of extensions: 167892
Number of successful extensions: 293
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 17
Length of query: 160
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 67
Effective length of database: 12,179,899
Effective search space: 816053233
Effective search space used: 816053233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)