Os07g0476500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0476500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.05 | 0.29 | 11.7 | -0.643 | 0.665 | 1.17 | -0.372 | -0.0236 | -0.12 | 11.5 | 11.98 | 406 | -- | -- |
| 38.05 | 0.287 | 11.7 | -0.64 | 0.667 | 1.17 | -0.371 | -- | -0.119 | 11.5 | 12.24 | 408 | -- | -- |
| 38.59 | 0.289 | 11.7 | -0.642 | 0.707 | 1.14 | -- | 0.0734 | -0.114 | 11.7 | 12.84 | 467 | -- | -- |
| 38.59 | 0.289 | 11.7 | -0.654 | 0.707 | 1.14 | -- | -- | -0.118 | 11.7 | 12.93 | 466 | -- | -- |
| 48.87 | 0.327 | 11.8 | -0.751 | -- | 1.6 | -- | -0.29 | -0.185 | -- | 11.43 | 9 | -- | -- |
| 53.13 | 0.342 | 11.7 | -0.393 | 0.716 | -- | -0.157 | -- | 0.0517 | 13.3 | -- | -- | -- | -- |
| 53.23 | 0.342 | 11.7 | -0.398 | 0.717 | -- | -- | -- | 0.051 | 13.3 | -- | -- | -- | -- |
| 48.94 | 0.327 | 11.8 | -0.711 | -- | 1.59 | -- | -- | -0.174 | -- | 11.43 | 9 | -- | -- |
| 48.56 | 0.325 | 11.7 | -- | 0.68 | 0.761 | -- | -- | -0.0052 | 12.1 | 16.89 | 412 | -- | -- |
| 84.89 | 0.431 | 11.7 | -0.426 | -- | -- | -- | -- | 0.0361 | -- | -- | -- | -- | -- |
| 57.41 | 0.354 | 11.7 | -- | 0.724 | -- | -- | -- | 0.0953 | 13.4 | -- | -- | -- | -- |
| 61.28 | 0.366 | 11.7 | -- | -- | 1.21 | -- | -- | -0.0715 | -- | 16.89 | 412 | -- | -- |
| 89.68 | 0.442 | 11.7 | -- | -- | -- | -- | -- | 0.0833 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 24 | 37.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 26 | 37.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 30 | 37.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 33 | 37.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 44 | 37.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 70 | 37.86 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 82 | 37.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 20 |
| 117 | 38.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 175 | 38.48 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 188 | 38.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 12 |
| 200 | 38.54 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 10 |
| 234 | 38.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 9 |
| 260 | 38.62 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 8 |
| 355 | 38.73 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 393 | 38.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 421 | 38.79 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 497 | 38.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 512 | 38.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 513 | 38.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 604 | 38.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 662 | 39.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 726 | 39.07 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 830 | 39.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 900 | 39.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 916 | 39.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 974 | 39.31 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 996 | 39.33 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |