BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0476500 Os07g0476500|AK066346
(235 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0476500 Peptidyl-prolyl cis-trans isomerase, cyclophil... 489 e-139
Os08g0557500 Similar to Yarrowia lipolytica chromosome C of... 92 5e-19
Os08g0559400 Similar to Cyclophilin-like protein 83 1e-16
Os05g0103200 Peptidyl-prolyl cis-trans isomerase, cyclophil... 82 3e-16
Os06g0130500 Similar to Cyclophilin-like protein PPIL3b 77 8e-15
Os06g0216800 Similar to Cyclophilin-40 (Expressed protein) 77 1e-14
Os02g0761100 Similar to Cyclophilin-40 (Expressed protein) 73 2e-13
Os02g0121300 Cyclophilin 2 72 3e-13
AK062540 71 5e-13
Os09g0571400 Cyclophilin 1 68 7e-12
>Os07g0476500 Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain
containing protein
Length = 235
Score = 489 bits (1260), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MARIKPKQLLIQSKTKKAPTRISYSTIVTWNLIVILVALSLYATYRHWHHRPMLETEMDL 60
MARIKPKQLLIQSKTKKAPTRISYSTIVTWNLIVILVALSLYATYRHWHHRPMLETEMDL
Sbjct: 1 MARIKPKQLLIQSKTKKAPTRISYSTIVTWNLIVILVALSLYATYRHWHHRPMLETEMDL 60
Query: 61 PRAEHVGRSEDSTKTSRPSYAVIDTAKGSITIEIYKDASADVVDRFVSLCKSNHFKGMPF 120
PRAEHVGRSEDSTKTSRPSYAVIDTAKGSITIEIYKDASADVVDRFVSLCKSNHFKGMPF
Sbjct: 61 PRAEHVGRSEDSTKTSRPSYAVIDTAKGSITIEIYKDASADVVDRFVSLCKSNHFKGMPF 120
Query: 121 RHVIKNFVIQGGDFDFNGAAQEWILKAKASGENALSPKHEAFMIGTTKNPNNKGFDLFIT 180
RHVIKNFVIQGGDFDFNGAAQEWILKAKASGENALSPKHEAFMIGTTKNPNNKGFDLFIT
Sbjct: 121 RHVIKNFVIQGGDFDFNGAAQEWILKAKASGENALSPKHEAFMIGTTKNPNNKGFDLFIT 180
Query: 181 TAPIPDLNDKLVVFGQVINGQDIVQEIEEVDTDEHYQPKTPIGILNITLKQQALS 235
TAPIPDLNDKLVVFGQVINGQDIVQEIEEVDTDEHYQPKTPIGILNITLKQQALS
Sbjct: 181 TAPIPDLNDKLVVFGQVINGQDIVQEIEEVDTDEHYQPKTPIGILNITLKQQALS 235
>Os08g0557500 Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of
Yarrowia lipolytica
Length = 154
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 82 VIDTAKGSITIEIYKDASADVVDRFVSLCKSNHFKGMPFRHVIKNFVIQGGDFDFNGAAQ 141
V+ T+ G I + +Y + V+ F + C++ ++ + F VIK F+IQ GD +G
Sbjct: 2 VMHTSMGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGG 61
Query: 142 EWILKAKASGENALSPKHEAFMIGTTKN--PNNKGFDLFITTAPIPDLNDKLVVFGQVIN 199
+ I + E S +H+ + N PN G FITT P L++K VFG+V+
Sbjct: 62 QSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVK 121
Query: 200 GQDIVQEIEEVDTDEHYQPKTPIGILNITL 229
G D+VQ+IE+V TD++ +P + ILN+T+
Sbjct: 122 GMDVVQQIEKVKTDKNDKPYQDVKILNVTV 151
>Os08g0559400 Similar to Cyclophilin-like protein
Length = 164
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 2/150 (1%)
Query: 83 IDTAKGSITIEIYKDASADVVDRFVSLCKSNHFKGMPFRHVIKNFVIQGGDFDFNGAAQE 142
++T+ G+ TIE+Y + F+ L + ++ + F +IK+F++QGGD G E
Sbjct: 14 LETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIVQGGDPTGTGRGGE 73
Query: 143 WILKAKASGENALSPKHEAFMIGTTKN--PNNKGFDLFITTAPIPDLNDKLVVFGQVING 200
I AK E KH I + N PN G FIT AP L+ K +FG+V G
Sbjct: 74 SIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIFGRVSKG 133
Query: 201 QDIVQEIEEVDTDEHYQPKTPIGILNITLK 230
+IV+ + V TD+ +P + IL +K
Sbjct: 134 MEIVKRLGSVQTDKSDRPIHEVKILRTVVK 163
>Os05g0103200 Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain
containing protein
Length = 250
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 88 GSITIEIYKDASADVVDRFVSLC---KSNHFKGMPFRHVIKNFVIQGGDFD-FNGAAQEW 143
G + I +Y D + F +LC K +KG F VIK+F+IQGGDFD NG +
Sbjct: 100 GRVVIGLYGDDVPQTAENFRALCTGEKGFGYKGSSFHRVIKDFMIQGGDFDKGNGTGGKS 159
Query: 144 ILKAKASGEN-ALSPKHEAFMIGTTKNPNNKGFDLFITTAPIPDLNDKLVVFGQVINGQD 202
I EN L + PN G FI T P L+ + VVFGQVI G D
Sbjct: 160 IYGRTFKDENFKLVHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDGRHVVFGQVIEGMD 219
Query: 203 IVQEIEEVDTDEHYQPK 219
IV+ IE +TD +PK
Sbjct: 220 IVKMIESQETDRGDRPK 236
>Os06g0130500 Similar to Cyclophilin-like protein PPIL3b
Length = 160
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 2/156 (1%)
Query: 82 VIDTAKGSITIEIYKDASADVVDRFVSLCKSNHFKGMPFRHVIKNFVIQGGDFDFNGAAQ 141
+ T G I E++ D + + F++LC S ++ G F IK F+IQGGD G
Sbjct: 4 TLHTNLGDIKCEVFCDQAPRTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGG 63
Query: 142 EWILKAKASGENALSPKHEAFMIGTTKN--PNNKGFDLFITTAPIPDLNDKLVVFGQVIN 199
I K + E S KH A + + N PN G FIT A P LN VF +VI+
Sbjct: 64 TSIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVFAKVIH 123
Query: 200 GQDIVQEIEEVDTDEHYQPKTPIGILNITLKQQALS 235
G +++ +E+ T +P I + +T+ L+
Sbjct: 124 GFEVLDLMEKAQTGPGDRPLAEIRLNRVTIHANPLA 159
>Os06g0216800 Similar to Cyclophilin-40 (Expressed protein)
Length = 396
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 71/154 (46%), Gaps = 13/154 (8%)
Query: 87 KGSITIEIYKDASADVVDRFVSLC-----------KSNHFKGMPFRHVIKNFVIQGGDFD 135
+G I IE+Y + F +LC K H+KG F VIK F++QGGD
Sbjct: 39 EGRIVIELYASVVPRTAENFRALCTGEKGVGAVTGKHLHYKGSCFHRVIKGFMVQGGDIT 98
Query: 136 F-NGAAQEWILKAKASGEN-ALSPKHEAFMIGTTKNPNNKGFDLFITTAPIPDLNDKLVV 193
+G E I K EN L + + + PN G FITT P L+ K VV
Sbjct: 99 AGDGTGGESIYGLKFEDENFVLKHERKGMLSMANSGPNTNGSQFFITTTRTPHLDGKHVV 158
Query: 194 FGQVINGQDIVQEIEEVDTDEHYQPKTPIGILNI 227
FG+VI G +V+ +E E +P + + I++
Sbjct: 159 FGRVIKGMGVVRSVEHAPVGEADRPTSDVEIVDC 192
>Os02g0761100 Similar to Cyclophilin-40 (Expressed protein)
Length = 403
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 13/154 (8%)
Query: 87 KGSITIEIYKDASADVVDRFVSLCKSN-----------HFKGMPFRHVIKNFVIQGGDFD 135
+G I +E+Y + + F +LC H+KG ++K F++QGGD
Sbjct: 46 EGRIVVELYASVAPRTAENFRALCTGEKGVSAATGVPLHYKGSCIHRIVKGFMVQGGDIT 105
Query: 136 F-NGAAQEWILKAKASGEN-ALSPKHEAFMIGTTKNPNNKGFDLFITTAPIPDLNDKLVV 193
+G E I EN L + + + P+ G FITT P L+ K VV
Sbjct: 106 AGDGTGGESIYGLNFEDENFVLKHERKGMLSMANAGPDTNGSQFFITTTRTPHLDGKHVV 165
Query: 194 FGQVINGQDIVQEIEEVDTDEHYQPKTPIGILNI 227
FG+VI G +V+ +E V E +P T I I++
Sbjct: 166 FGRVIKGMGVVRSMEHVSVGESDRPITDIVIVDC 199
>Os02g0121300 Cyclophilin 2
Length = 172
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 88 GSITIEIYKDASADVVDRFVSLC----------KSNHFKGMPFRHVIKNFVIQGGDFD-F 136
G I +E+Y + F +LC K H+KG F VI F+ QGGDF
Sbjct: 18 GRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRG 77
Query: 137 NGAAQEWILKAKASGENALSPKHEAFMIGTTKN--PNNKGFDLFITTAPIPDLNDKLVVF 194
NG E I K + E KH++ I + N PN G FI T P L+ K VVF
Sbjct: 78 NGTGGESIYGEKFADE-VFKFKHDSPGILSMANAGPNTNGSQFFICTVPCSWLDGKHVVF 136
Query: 195 GQVINGQDIVQEIEEVDT 212
G+V+ G D+V+ IE+V +
Sbjct: 137 GRVVEGMDVVKAIEKVGS 154
>AK062540
Length = 206
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 12/174 (6%)
Query: 51 RPMLETEMDLPRAEHVGRSEDSTKTSRPSYAVIDTAKGSITIEIYKDASADVVDRFVSLC 110
R +L + + A G+ T + G + + +Y V+ F +LC
Sbjct: 7 RVLLALALCMTVAVEAGKGPKITNQVFFDITIGGKDAGRVVMGLYGKTVPKTVENFRALC 66
Query: 111 KSN----------HFKGMPFRHVIKNFVIQGGDF-DFNGAAQEWILKAKASGEN-ALSPK 158
H+KG F +I NF+IQGGDF D NG E I K EN L
Sbjct: 67 TGEKGMGKKGKPLHYKGSTFHRIIPNFMIQGGDFTDGNGMGGESIYGEKFEDENFKLKHT 126
Query: 159 HEAFMIGTTKNPNNKGFDLFITTAPIPDLNDKLVVFGQVINGQDIVQEIEEVDT 212
E + N G FI T L+ + VVFG+VI+G DI++ +E V +
Sbjct: 127 GEGVLSMANAGANTNGSQFFICTVKTSWLDGRHVVFGRVISGMDIIKAVEAVGS 180
>Os09g0571400 Cyclophilin 1
Length = 179
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 88 GSITIEIYKDASADVVDRFVSLCKSN----------HFKGMPFRHVIKNFVIQGGDFD-F 136
G + +E++ D + F LC H+KG F +I NF+ QGGDF
Sbjct: 20 GRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQGGDFTRG 79
Query: 137 NGAAQEWILKAKASGENALSPKHEAFMIGTTKN--PNNKGFDLFITTAPIPDLNDKLVVF 194
NG E I + + EN +H + + N PN G FI T L+ K VVF
Sbjct: 80 NGTGGESIYGDRFADEN-FKLRHTGPGVLSMANAGPNTNGSQFFICTTRTTWLDGKHVVF 138
Query: 195 GQVINGQDIVQEIEEVDT 212
G+V++G +V+++E+V +
Sbjct: 139 GKVVDGYTVVEKMEQVGS 156
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,906,337
Number of extensions: 325600
Number of successful extensions: 645
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 10
Length of query: 235
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 137
Effective length of database: 11,918,829
Effective search space: 1632879573
Effective search space used: 1632879573
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)