Os11g0602900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain containing protein.
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Os11g0602900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.7 | 0.363 | 10.8 | -1.26 | 0.367 | -1.15 | -0.0403 | 2.22 | -0.0131 | 7.62 | 29.45 | 701 | -- | -- |
| 63.62 | 0.374 | 10.7 | -0.794 | 0.45 | -1.19 | -0.107 | -- | 0.0755 | 2.82 | 27.33 | 736 | -- | -- |
| 59.7 | 0.36 | 10.8 | -1.25 | 0.369 | -1.15 | -- | 2.16 | -0.012 | 7.58 | 29.3 | 690 | -- | -- |
| 63.43 | 0.373 | 10.7 | -0.789 | 0.427 | -1.19 | -- | -- | 0.0745 | 2.86 | 26.79 | 649 | -- | -- |
| 62.05 | 0.367 | 10.8 | -1.4 | -- | -1.05 | -- | 2.35 | -0.0367 | -- | 29.62 | 1274 | -- | -- |
| 84.03 | 0.43 | 10.7 | -0.514 | 0.113 | -- | 0.425 | -- | 0.338 | 7.26 | -- | -- | -- | -- |
| 84.28 | 0.43 | 10.7 | -0.508 | 0.133 | -- | -- | -- | 0.336 | 5.41 | -- | -- | -- | -- |
| 64.2 | 0.373 | 10.7 | -0.893 | -- | -1.33 | -- | -- | 0.0984 | -- | 23.6 | 1405 | -- | -- |
| 77.93 | 0.413 | 10.7 | -- | 0.262 | -0.893 | -- | -- | 0.237 | 3.01 | 25.15 | 59 | -- | -- |
| 85.2 | 0.431 | 10.7 | -0.503 | -- | -- | -- | -- | 0.339 | -- | -- | -- | -- | -- |
| 91.07 | 0.446 | 10.6 | -- | 0.125 | -- | -- | -- | 0.393 | 5.58 | -- | -- | -- | -- |
| 81 | 0.421 | 10.7 | -- | -- | -0.786 | -- | -- | 0.286 | -- | 24.2 | 33 | -- | -- |
| 91.88 | 0.447 | 10.7 | -- | -- | -- | -- | -- | 0.395 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 2 | 58.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 22 |
| 9 | 59.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 22 |
| 13 | 59.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 20 |
| 18 | 59.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 23 | 59.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 27 | 59.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 54 | 59.77 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 84 | 60.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 98 | 60.08 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 104 | 60.14 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 111 | 60.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 113 | 60.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 114 | 60.18 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 126 | 60.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 131 | 60.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 178 | 60.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 185 | 60.38 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 201 | 60.42 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 288 | 60.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 300 | 60.63 | temperature | 10 | 1440 | > th | dose dependent | sin | 14 | NA |
| 327 | 60.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 12 |