BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0602900 Os11g0602900|AK068821
(235 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0602900 Peptidyl-prolyl cis-trans isomerase, cyclophil... 444 e-125
Os08g0557500 Similar to Yarrowia lipolytica chromosome C of... 74 7e-14
Os08g0559400 Similar to Cyclophilin-like protein 68 7e-12
Os06g0130500 Similar to Cyclophilin-like protein PPIL3b 66 2e-11
>Os11g0602900 Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain
containing protein
Length = 235
Score = 444 bits (1141), Expect = e-125, Method: Compositional matrix adjust.
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 24 STDGATSFYASDPNLGSARVVFQTTHGDIEFGFFPHVAPKTVEHIYKLVRLGCYNTNHFF 83
STDGATSFYASDPNLGSARVVFQTTHGDIEFGFFPHVAPKTVEHIYKLVRLGCYNTNHFF
Sbjct: 24 STDGATSFYASDPNLGSARVVFQTTHGDIEFGFFPHVAPKTVEHIYKLVRLGCYNTNHFF 83
Query: 84 RVDKGFVAQVASVVGGRTAPMNDEQQEEAEKSVVGEFSTVKHVRGILSMGRHSDPNSGGS 143
RVDKGFVAQVASVVGGRTAPMNDEQQEEAEKSVVGEFSTVKHVRGILSMGRHSDPNSGGS
Sbjct: 84 RVDKGFVAQVASVVGGRTAPMNDEQQEEAEKSVVGEFSTVKHVRGILSMGRHSDPNSGGS 143
Query: 144 SFSILLGDAPHLDGQYAVFGRLTKGDDTLRKLEQLPTRREGIFVMPIERISILSTYYYDV 203
SFSILLGDAPHLDGQYAVFGRLTKGDDTLRKLEQLPTRREGIFVMPIERISILSTYYYDV
Sbjct: 144 SFSILLGDAPHLDGQYAVFGRLTKGDDTLRKLEQLPTRREGIFVMPIERISILSTYYYDV 203
Query: 204 DLESCEAEKSILRRRLSESASEVERWRRKCFA 235
DLESCEAEKSILRRRLSESASEVERWRRKCFA
Sbjct: 204 DLESCEAEKSILRRRLSESASEVERWRRKCFA 235
>Os08g0557500 Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of
Yarrowia lipolytica
Length = 154
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 43 VVFQTTHGDIEFGFFPHVAPKTVEHIYKLVRLGCYNTNHFFRVDKGFVAQVASVVG---G 99
+V T+ GDI +P PKTVE+ R G Y+ F RV KGF+ Q +G G
Sbjct: 1 MVMHTSMGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTG 60
Query: 100 RTAPMNDEQQEEAEKSVVGEFSTVKHVRGILSMGRHSDPNSGGSSFSILLGDAPHLDGQY 159
+ E ++E KS+ +H R ++ PN+ GS F I P LD ++
Sbjct: 61 GQSIWGREFEDEFHKSL-------RHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKH 113
Query: 160 AVFGRLTKGDDTLRKLEQLPTRREGIFVMPIERISILS 197
VFGR+ KG D ++++E++ T + P + + IL+
Sbjct: 114 TVFGRVVKGMDVVQQIEKVKTDKND---KPYQDVKILN 148
>Os08g0559400 Similar to Cyclophilin-like protein
Length = 164
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 23/172 (13%)
Query: 39 GSARVVFQTTHGDIEFGFFPHVAPKTVEHIYKLVRLGCYNTNHFFRVDKGFVAQVASVVG 98
G+ V +T+ G + APKT + +L R G Y+ F R+ K F+ Q G
Sbjct: 8 GTPEVTLETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIVQGGDPTG 67
Query: 99 -GRT------APMNDEQQEEAEKSVVGEFSTVKHV-RGILSMGRHSDPNSGGSSFSILLG 150
GR A DE + E +KH GILSM ++ PN+ GS F I L
Sbjct: 68 TGRGGESIYGAKFEDEIRPE-----------LKHTGAGILSMA-NAGPNTNGSQFFITLA 115
Query: 151 DAPHLDGQYAVFGRLTKGDDTLRKLEQLPTRREGIFVMPIERISILSTYYYD 202
LDG++ +FGR++KG + +++L + T + PI + IL T D
Sbjct: 116 PCQSLDGKHTIFGRVSKGMEIVKRLGSVQTDKSD---RPIHEVKILRTVVKD 164
>Os06g0130500 Similar to Cyclophilin-like protein PPIL3b
Length = 160
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 43 VVFQTTHGDIEFGFFPHVAPKTVEHIYKLVRLGCYNTNHFFRVDKGFVAQVASVVGGRTA 102
V T GDI+ F AP+T E+ L G Y+ F R KGF+ Q GG
Sbjct: 3 VTLHTNLGDIKCEVFCDQAPRTAENFLALCASGYYDGTIFHRNIKGFMIQ-----GGDPT 57
Query: 103 PMNDEQQEEAEKSVVGEF-STVKH-VRGILSMGRHSDPNSGGSSFSILLGDAPHLDGQYA 160
K EF ++KH RG++SM +S PN+ GS F I PHL+G Y
Sbjct: 58 GTGKGGTSIWGKKFADEFRESLKHNARGVMSMA-NSGPNTNGSQFFITYAKQPHLNGHYT 116
Query: 161 VFGRLTKGDDTLRKLEQLPT 180
VF ++ G + L +E+ T
Sbjct: 117 VFAKVIHGFEVLDLMEKAQT 136
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,585,322
Number of extensions: 310701
Number of successful extensions: 799
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 803
Number of HSP's successfully gapped: 4
Length of query: 235
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 137
Effective length of database: 11,918,829
Effective search space: 1632879573
Effective search space used: 1632879573
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)