BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0548300 Os08g0548300|AK073266
(305 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0548300 Zinc finger, RING-type domain containing protein 336 1e-92
Os09g0535100 Zinc finger, RING-type domain containing protein 225 3e-59
Os03g0173900 Zinc finger, RING-type domain containing protein 113 2e-25
Os04g0571200 Zinc finger, RING-type domain containing protein 104 8e-23
Os09g0525400 Similar to RING finger protein 13 (C-RZF) 101 8e-22
Os06g0125800 Zinc finger, RING-type domain containing protein 86 5e-17
Os08g0241400 Zinc finger, RING-type domain containing protein 80 1e-15
Os04g0185500 Similar to Protein containing C-terminal RING-... 75 5e-14
Os01g0692700 Zinc finger, RING-type domain containing protein 72 4e-13
Os02g0798600 Similar to RING finger protein 12 (LIM domain ... 72 7e-13
Os02g0686100 Similar to RING-H2 finger protein ATL1B 71 1e-12
Os05g0163400 Zinc finger, RING-type domain containing protein 70 2e-12
Os02g0150700 Similar to RING finger protein 12 (LIM domain ... 68 8e-12
Os04g0648800 Zinc finger, RING-type domain containing protein 68 9e-12
Os01g0159300 Zinc finger, RING-type domain containing protein 67 1e-11
Os08g0487500 Zinc finger, RING-type domain containing protein 67 1e-11
Os01g0667700 Zinc finger, RING-type domain containing protein 67 2e-11
Os10g0487400 Zinc finger, RING-type domain containing protein 66 3e-11
Os06g0695600 Zinc finger, RING-type domain containing protein 66 3e-11
Os01g0830900 65 4e-11
Os02g0820200 Zinc finger, RING-type domain containing protein 65 6e-11
Os11g0142600 65 6e-11
Os02g0767600 65 8e-11
>Os08g0548300 Zinc finger, RING-type domain containing protein
Length = 305
Score = 336 bits (862), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 181/269 (67%), Positives = 181/269 (67%)
Query: 37 GRRPFTSLTQEEADLALARVLQEQERAYMMLSAHHGGDYAASXXXXXXXXXXXXXXXXXX 96
GRRPFTSLTQEEADLALARVLQEQERAYMMLSAHHGGDYAAS
Sbjct: 37 GRRPFTSLTQEEADLALARVLQEQERAYMMLSAHHGGDYAASDGGSYEFDEEGEGSDFED 96
Query: 97 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYEDDEAFARALQDAEEREVAGRLM 156
RYEDDEAFARALQDAEEREVAGRLM
Sbjct: 97 EDGDGDGDGEALDEDEEVADADADAAGDPAELDPARYEDDEAFARALQDAEEREVAGRLM 156
Query: 157 ALAGLSDWRVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPDEYSYEELVAL 216
ALAGLSDWRVM VDPDEYSYEELVAL
Sbjct: 157 ALAGLSDWRVMDHDDDDVDDDDDEDDDDDDDDEDEDGDDPQDAWEDVDPDEYSYEELVAL 216
Query: 217 GEVVGTESRGLSADTLASLPSITYRAQDKQDGNMEQCVICRVEFEEGESLVALPCKHSYH 276
GEVVGTESRGLSADTLASLPSITYRAQDKQDGNMEQCVICRVEFEEGESLVALPCKHSYH
Sbjct: 217 GEVVGTESRGLSADTLASLPSITYRAQDKQDGNMEQCVICRVEFEEGESLVALPCKHSYH 276
Query: 277 SECINQWLQLNKVCPMCSAEVPTSQDTRA 305
SECINQWLQLNKVCPMCSAEVPTSQDTRA
Sbjct: 277 SECINQWLQLNKVCPMCSAEVPTSQDTRA 305
>Os09g0535100 Zinc finger, RING-type domain containing protein
Length = 325
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 114/173 (65%), Positives = 124/173 (71%), Gaps = 19/173 (10%)
Query: 133 YEDDEAFARALQDAEEREVAGRLMALAGLSDWRVMXXXXXXXXXXXXXXXXXXXXXXXXX 192
YEDDEA+ARALQDAEEREVA RLMALAG+SDWR +
Sbjct: 172 YEDDEAYARALQDAEEREVAARLMALAGISDWRPVEPVEEHANDPQDAWQE--------- 222
Query: 193 XXXXXXXXXXVDPDEYSYEELVALGEVVGTESRGLSADTLASLPSITYRAQDKQDGNMEQ 252
VDPDEYSYEELVALGE VGT RGLSA TLASLPS+TY+A+ QDGN EQ
Sbjct: 223 ----------VDPDEYSYEELVALGEAVGTGHRGLSAATLASLPSVTYKAEGVQDGNTEQ 272
Query: 253 CVICRVEFEEGESLVALPCKHSYHSECINQWLQLNKVCPMCSAEVPTSQDTRA 305
CVICRVEFE+GESL+ALPCKHSYH ECINQWLQ+NKVCPMCSAEV TS +A
Sbjct: 273 CVICRVEFEDGESLIALPCKHSYHPECINQWLQINKVCPMCSAEVSTSDSNQA 325
>Os03g0173900 Zinc finger, RING-type domain containing protein
Length = 250
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 2/104 (1%)
Query: 203 VDPDEYSYEELVALGEVVGTESRGLSADTLASLPSITYRAQ--DKQDGNMEQCVICRVEF 260
+DPD +YEEL+ LGE VGT+SRGLS + ++ LP Y+ ++ E+CVIC++E+
Sbjct: 146 IDPDNMTYEELLDLGEAVGTQSRGLSQERISLLPVTKYKCGFFSRKKTRRERCVICQMEY 205
Query: 261 EEGESLVALPCKHSYHSECINQWLQLNKVCPMCSAEVPTSQDTR 304
G + LPCKH YH+ C+ +WL +NKVCP+C AEVP + R
Sbjct: 206 RRGNLQMTLPCKHVYHASCVTRWLSINKVCPVCFAEVPGDEPKR 249
>Os04g0571200 Zinc finger, RING-type domain containing protein
Length = 290
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 67/100 (67%), Gaps = 9/100 (9%)
Query: 203 VDPDEYSYEELVALGEVVGTESRGLSADTLASLPSITYRA-----QDKQDGNMEQCVICR 257
+DPD +YEEL LGE +GTES+GL D +A LP+ TY+ ++K D +CVIC
Sbjct: 190 IDPDNMTYEELQQLGEAIGTESKGLPEDVIALLPTSTYKIRIFSRKEKHD----ECVICC 245
Query: 258 VEFEEGESLVALPCKHSYHSECINQWLQLNKVCPMCSAEV 297
+ ++ + L LPC+H YH C+ +WL++NKVCP+C+ EV
Sbjct: 246 MTYKNRDRLTKLPCEHQYHQTCVTKWLKINKVCPVCNKEV 285
>Os09g0525400 Similar to RING finger protein 13 (C-RZF)
Length = 174
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 203 VDPDEYSYEELVALGEVVGTESRGLSADTLASLPSITYRAQD-KQDGNMEQCVICRVEFE 261
VDPD SYE+L ALGE VG +SRGLS D + L + + N E+CVIC+ ++
Sbjct: 77 VDPDNMSYEQLQALGEAVGNQSRGLSDDLICYLVPFKNKCSFFSRKKNDEECVICKSTYK 136
Query: 262 EGESLVALPCKHSYHSECINQWLQLNKVCPMCSAEV 297
+ L+ LPC H YH++CI +WL++NK CP+C+ EV
Sbjct: 137 SRQKLIRLPCSHCYHADCITRWLKINKACPVCNEEV 172
>Os06g0125800 Zinc finger, RING-type domain containing protein
Length = 261
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 204 DPDEYSYEELVALGEVVGTESRGLSADTLASLPSITYRAQD-KQDGNMEQCVICRVEFEE 262
DPD +YE+ AL E VG E+RGLS ++ L + Y++ + N + C IC F
Sbjct: 163 DPDNMTYEQRQALVESVGNENRGLSDLLISYLETWKYKSGFFPRKANHDNCPICLSAFRR 222
Query: 263 GESLVALPCKHSYHSECINQWLQLNKVCPMCSAEV 297
E+L+ L CKHSYH CI +WL+++K CP+C EV
Sbjct: 223 RETLITLACKHSYHEGCIARWLKIDKACPVCKYEV 257
>Os08g0241400 Zinc finger, RING-type domain containing protein
Length = 349
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
Query: 203 VDPDEYSYEELVALGEVVGTESRGLSADTLAS-LPSITY---RAQDKQDGNMEQCVICRV 258
+D D+ SYEEL+ALGE +GT S GL D L++ L I Y + +DG++ +C+IC+
Sbjct: 247 MDIDDMSYEELLALGETIGTVSTGLPEDELSNCLKRIHYVPSASTSHEDGDI-KCIICQE 305
Query: 259 EFEEGESLVALPCKHSYHSECINQWLQLNKVCPMCSA 295
E+ E + + CKH YH CI QWL+ CP+C +
Sbjct: 306 EYLPAEEVAEMACKHYYHLACIQQWLRQKNWCPICKS 342
>Os04g0185500 Similar to Protein containing C-terminal RING-finger
Length = 709
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 203 VDPDEYSYEELVALGEVVGTESRGLSADT----LASLPSITYRAQDKQDGNMEQCVICRV 258
+D D SYEEL+ALGE +G + GLS D L ++ ++ G +E C IC+
Sbjct: 609 LDVDNMSYEELLALGERIGYVNTGLSEDKIRTGLKQWKYVSIPIEEPLTG-VEPCCICQE 667
Query: 259 EFEEGESLVALPCKHSYHSECINQWLQLNKVCPMC 293
E+ EGE + L C H +H+ CI QWL + +CP+C
Sbjct: 668 EYAEGEDMGRLDCGHDFHTACIKQWLVIKNLCPIC 702
>Os01g0692700 Zinc finger, RING-type domain containing protein
Length = 201
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 203 VDPDEYSYEELVALGEVVGTESRGLSADTLA-SLPSITYRAQD---KQDGNMEQ-CVICR 257
+D D +YEEL+ LG+ +G + GL D + +L + + A D + ME+ C IC+
Sbjct: 99 LDVDNMTYEELLELGDKIGYVNTGLREDEIVRNLRKVKHPAFDSSFRYSTEMEKKCSICQ 158
Query: 258 VEFEEGESLVALPCKHSYHSECINQWLQLNKVCPMCSAEV 297
EFE E + L C HSYH CI QWL VCP+C V
Sbjct: 159 EEFEANEEMGRLDCGHSYHVYCIKQWLSQKNVCPVCKTAV 198
>Os02g0798600 Similar to RING finger protein 12 (LIM domain interacting RING
finger protein) (RING finger LIM domain-binding protein)
(R-LIM)
Length = 389
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Query: 232 LASLPSITYRAQDKQ-DGNMEQCVICRVEFEEGESLVALPCKHSYHSECINQWLQ-LNKV 289
+ SLP +Y+ Q Q +MEQC IC E+E+G+ + +LPCKH +H C+++WL+ +++V
Sbjct: 317 VNSLPCKSYKKQTAQCSDDMEQCHICLTEYEDGDQIRSLPCKHEFHLLCVDKWLKEVHRV 376
Query: 290 CPMCSAEV 297
CP+C +V
Sbjct: 377 CPLCRGDV 384
>Os02g0686100 Similar to RING-H2 finger protein ATL1B
Length = 189
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 7/84 (8%)
Query: 224 SRGLSADTLASLPSITYRAQDKQDGNMEQCVICRVEFEEGESLVALP-CKHSYHSECINQ 282
++G+ + L SLP++TY D G E+C IC VEFE+G+++ LP C H +H+ CI+
Sbjct: 72 NKGVKKEVLRSLPTVTY-VSDGGGGEAEECAICLVEFEDGQAVRVLPQCDHRFHAACIDT 130
Query: 283 WLQLNKVCPMC-----SAEVPTSQ 301
WL+ + CP C +AE+P +
Sbjct: 131 WLRAHSSCPSCRRVLVAAEMPPGE 154
>Os05g0163400 Zinc finger, RING-type domain containing protein
Length = 533
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 7/98 (7%)
Query: 203 VDPDEYSYEELVALGEVVGTESRGLSADTLASLP-----SITYRAQDKQDGNMEQCVICR 257
+D D+ SYEEL+AL E +G + GL+ + ++ + QD QD E+CVIC
Sbjct: 431 LDIDDMSYEELLALEERIGHVNTGLADEKISGCVMEVACCSSSHLQDDQDN--ERCVICL 488
Query: 258 VEFEEGESLVALPCKHSYHSECINQWLQLNKVCPMCSA 295
E++ ++L L C H +H CI +WLQ+ CP+C A
Sbjct: 489 EEYKHEDTLGRLKCGHGFHCNCIKKWLQVKNTCPVCKA 526
>Os02g0150700 Similar to RING finger protein 12 (LIM domain interacting RING
finger protein) (RING finger LIM domain-binding protein)
(R-LIM) (NY-REN-43 antigen)
Length = 580
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 203 VDPDEYSYEELVALGEVVGTESRGLSADTLASL--PSITYRAQDKQDGNME---QCVICR 257
+D D SYEEL+ALG+ +G+ S LS + SI K + + +C IC+
Sbjct: 475 MDIDNMSYEELLALGDRIGSVSTALSEEQFVKCLRRSIYIPVATKANAQVVDDIKCSICQ 534
Query: 258 VEFEEGESLVALPCKHSYHSECINQWLQLNKVCPMCSA 295
E+ EGE + L C+H YH CI+QWL+ CP+C A
Sbjct: 535 EEYIEGEEVGRLGCEHQYHVCCIHQWLRQKNWCPICKA 572
>Os04g0648800 Zinc finger, RING-type domain containing protein
Length = 418
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 203 VDPDEYSYEELVALGEVVGTESRGLSADTLASLPSITYRAQDKQDGNMEQ--CVICRVEF 260
+D D SYEEL+AL E +G S GLS + + L + + + ++E+ C IC+ E+
Sbjct: 319 LDIDNMSYEELLALEERIGNVSTGLSEEEVTKLLKQRKFSSWRLEASVEEEPCCICQEEY 378
Query: 261 EEGESLVALPCKHSYHSECINQWLQLNKVCPMC 293
+G+ L L C H +H C+ QWL + CP+C
Sbjct: 379 VDGDDLGTLDCGHDFHVGCVRQWLVVKNTCPIC 411
>Os01g0159300 Zinc finger, RING-type domain containing protein
Length = 501
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 203 VDPDEYSYEELVALGEVVGTESRGLSADTLAS-LPSITYRAQDKQDGNME--QCVICRVE 259
+D D SYE+L+ALGE +G GL + ++ + + Y + D+Q + + +C IC E
Sbjct: 403 LDIDNMSYEDLLALGESIGNVCTGLVDEKISGCVREVIYCSSDEQQNDQDDGKCAICLEE 462
Query: 260 FEEGESLVALPCKHSYHSECINQWLQLNKVCPMCSA 295
+++ L L C H +H++C+ +WL+ CP+C +
Sbjct: 463 YKDNSLLGILKCNHDFHTDCVKKWLKEKNSCPICKS 498
>Os08g0487500 Zinc finger, RING-type domain containing protein
Length = 271
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 210 YEELVALGEVVGTESRGLSA-DTLASLPSITYRAQDKQDGNMEQCVICRVEFEEGESLVA 268
YE LV GE + +S+ +A + +LPS A +DG E+C +CR GE +
Sbjct: 169 YEVLV--GEGLFLKSKPPAARSAVEALPSAVVAA--GEDGEGEECAVCRDGVAAGERVKR 224
Query: 269 LPCKHSYHSECINQWLQLNKVCPMCSAEVPT 299
LPC H YH ECI WL + CP+C E+PT
Sbjct: 225 LPCSHGYHEECIMPWLDVRNSCPLCRFELPT 255
>Os01g0667700 Zinc finger, RING-type domain containing protein
Length = 523
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 203 VDPDEYSYEELVALGEVVGTESRGLSADTLAS-------LPSITYRAQDKQDGNMEQ--C 253
+D D +YEEL+AL E +G + GL+ + +P + + + +ME C
Sbjct: 412 LDIDSMTYEELLALEEQIGDVNTGLAKSYIVEKLKTSLFVPGSSCMSNKSSESSMENDAC 471
Query: 254 VICRVEFEEGESLVALPCKHSYHSECINQWLQLNKVCPMC 293
+IC+ E++ E + L C H YH +CI QWL + +CP+C
Sbjct: 472 IICQEEYQVKECIGTLDCGHRYHEDCIKQWLMVKNLCPIC 511
>Os10g0487400 Zinc finger, RING-type domain containing protein
Length = 304
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 232 LASLPSITYRAQDKQDGNMEQCVICRVEFEEGESLVALPCKHSYHSECINQWLQLNKVCP 291
L++LP + + +C +C+ +F GE +PCKH YH++CI WL L+ CP
Sbjct: 149 LSTLPDVVVTDAMVAAADGAECAVCKEDFSPGEGAKQMPCKHIYHADCIMPWLDLHNSCP 208
Query: 292 MCSAEVPT 299
+C E+PT
Sbjct: 209 ICRFELPT 216
>Os06g0695600 Zinc finger, RING-type domain containing protein
Length = 579
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 10/109 (9%)
Query: 203 VDPDEYSYEELVALGEVVGTESRGLSADTLAS--------LPSITYRAQDKQDGNMEQCV 254
+D D SYEEL+AL E +G+ S LS + L LP+ A ++ + +C
Sbjct: 468 MDIDNMSYEELLALEERIGSVSTALSDEQLVKCLKRNVYKLPNSDLEA-NRAVLDDAKCS 526
Query: 255 ICRVEFEEGESLVALPCKHSYHSECINQWLQLNKVCPMC-SAEVPTSQD 302
IC+ E+ EGE + + C+H YH CI++WL+ CP+C ++ +P+ D
Sbjct: 527 ICQEEYIEGEEVGRMQCEHQYHVSCIHEWLRQKNWCPICKTSAIPSEMD 575
>Os01g0830900
Length = 189
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 208 YSYEELVALGEVVGTESRGLSADTLASLPSITYRA-----QDKQDGNMEQCVICRVEFEE 262
+S A + GL T+AS+P YRA D DG QC IC EFEE
Sbjct: 77 FSSSHAAATAPGSASSVTGLDDATIASMPVALYRAVASAAGDGDDGGAAQCSICLGEFEE 136
Query: 263 GESLVALP-CKHSYHSECINQWLQLNKVCPMC-SAEVPTSQDTR 304
GE + ALP C H +H EC++ WL+ CP+C S+ +P + T+
Sbjct: 137 GEKVKALPLCGHGFHPECVDAWLRSRPSCPLCRSSLLPAAATTK 180
>Os02g0820200 Zinc finger, RING-type domain containing protein
Length = 320
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 223 ESRGLSADTLASLPSITYRAQDK-QDGNMEQCVICRVEFEEGESLVALP-CKHSYHSECI 280
E RGL + SLP+ YR K + +C +C EF+E E + LP C H +H +CI
Sbjct: 111 EPRGLEEAAIQSLPAFRYRKAIKDTTADSSECAVCISEFQEEERVRLLPSCLHVFHVDCI 170
Query: 281 NQWLQLNKVCPMCSAEVPTS 300
+ WLQ N CP+C A + T+
Sbjct: 171 DTWLQGNANCPLCRAAIATN 190
>Os11g0142600
Length = 269
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 228 SADTLASLPSITYRAQDKQDGNMEQCVICRVEFEEGESLVALPCKHSYHSECINQWLQLN 287
S+D +A+LP + + E C +C F+EG+ + +PC H +H+ CI++WL+++
Sbjct: 186 SSDAIAALPVPETTVSETETREEEACAVCLEGFKEGDRVKKMPCSHDFHANCISEWLRVS 245
Query: 288 KVCPMCSAEVPTSQDT 303
++CP C +P +D+
Sbjct: 246 RLCPHCRFALPAERDS 261
>Os02g0767600
Length = 335
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 229 ADTLASLPSITYRAQDKQDGNMEQCVICRVEFEEGESLVALPCKHSYHSECINQWLQLNK 288
+ + SLP++ DG+ QC +C+ +FE GE+ +PCKH YHS+CI WL+L+
Sbjct: 177 SSAIDSLPTVQITGAHLSDGS--QCPVCKEDFELGEAARQMPCKHVYHSDCIVPWLRLHN 234
Query: 289 VCPMCSAEV 297
CP+C ++
Sbjct: 235 SCPVCRYQL 243
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,960,667
Number of extensions: 168093
Number of successful extensions: 936
Number of sequences better than 1.0e-10: 26
Number of HSP's gapped: 1006
Number of HSP's successfully gapped: 28
Length of query: 305
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 205
Effective length of database: 11,814,401
Effective search space: 2421952205
Effective search space used: 2421952205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)