Os01g0692700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os01g0692700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.16 | 0.294 | 11.4 | -0.518 | 0.372 | -1.14 | -0.0431 | -1.45 | -0.0154 | 12.1 | 19.4 | 96 | -- | -- |
| 40.29 | 0.296 | 11.4 | -0.253 | 0.339 | -1.21 | -0.468 | -- | 0.0567 | 13 | 20.13 | 147 | -- | -- |
| 39.15 | 0.291 | 11.4 | -0.528 | 0.367 | -1.15 | -- | -1.51 | -0.019 | 12.1 | 19.2 | 101 | -- | -- |
| 41.04 | 0.298 | 11.4 | -0.271 | 0.367 | -1.21 | -- | -- | 0.0539 | 12.4 | 20.48 | 115 | -- | -- |
| 43.75 | 0.308 | 11.5 | -0.588 | -- | -1.06 | -- | -1.75 | -0.0533 | -- | 17.03 | 263 | -- | -- |
| 62.35 | 0.37 | 11.5 | -0.548 | 0.315 | -- | 1.07 | -- | -0.147 | 5.72 | -- | -- | -- | -- |
| 64.49 | 0.376 | 11.5 | -0.539 | 0.339 | -- | -- | -- | -0.15 | 6.91 | -- | -- | -- | -- |
| 45.79 | 0.315 | 11.4 | -0.288 | -- | -1.04 | -- | -- | 0.03 | -- | 18.64 | 407 | -- | -- |
| 42.81 | 0.305 | 11.4 | -- | 0.393 | -1.3 | -- | -- | 0.1 | 12.5 | 19.92 | 115 | -- | -- |
| 70.51 | 0.392 | 11.5 | -0.531 | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
| 72.13 | 0.397 | 11.4 | -- | 0.333 | -- | -- | -- | -0.0903 | 7.01 | -- | -- | -- | -- |
| 47.62 | 0.321 | 11.4 | -- | -- | -1.21 | -- | -- | 0.0772 | -- | 16.83 | 517 | -- | -- |
| 77.95 | 0.412 | 11.4 | -- | -- | -- | -- | -- | -0.0849 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.08 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 8 | 35.71 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 16 | 36.20 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 19 | 36.22 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 20 | 36.23 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 28 | 36.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 33 | 36.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 44 | 36.98 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 53 | 37.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 68 | 37.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 123 | 38.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 154 | 38.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 211 | 39.26 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 212 | 39.26 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 227 | 39.33 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 247 | 39.49 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 248 | 39.50 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 17 |
| 274 | 39.68 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 282 | 39.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 290 | 39.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 297 | 39.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 404 | 40.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 19 |
| 434 | 40.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 450 | 40.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 462 | 40.53 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 473 | 40.57 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 506 | 40.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 633 | 41.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 642 | 41.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 648 | 41.14 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 649 | 41.14 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 883 | 41.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 925 | 41.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |