Os02g0798600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RING finger protein 12 (LIM domain interacting RING finger protein) (RING finger LIM domain-binding protein) (R-LIM).
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Os02g0798600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RING finger protein 12 (LIM domain interacting RING finger protein) (RING finger LIM domain-binding protein) (R-LIM).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.48 | 0.32 | 11.8 | 0.36 | 0.462 | -1.2 | -1.34 | 1.12 | 0.162 | 7 | 23.44 | 114 | -- | -- |
| 47.01 | 0.319 | 11.9 | 0.203 | 0.486 | -1.09 | -1.45 | -- | 0.123 | 6.73 | 22.69 | 118 | -- | -- |
| 50.87 | 0.332 | 11.8 | 0.416 | 0.467 | -1.18 | -- | 1.49 | 0.2 | 7.02 | 22.53 | 139 | -- | -- |
| 51.93 | 0.336 | 11.9 | 0.178 | 0.532 | -1.06 | -- | -- | 0.139 | 7.03 | 21.79 | 90 | -- | -- |
| 56.54 | 0.35 | 11.8 | 0.561 | -- | -1.49 | -- | 2.24 | 0.271 | -- | 23.28 | 268 | -- | -- |
| 68.43 | 0.388 | 11.9 | -0.038 | 0.85 | -- | -1.06 | -- | -0.0393 | 5.59 | -- | -- | -- | -- |
| 71.16 | 0.395 | 11.9 | -0.0435 | 0.843 | -- | -- | -- | -0.035 | 5.46 | -- | -- | -- | -- |
| 60.74 | 0.363 | 11.9 | 0.17 | -- | -1.35 | -- | -- | 0.148 | -- | 23.28 | 219 | -- | -- |
| 52.76 | 0.338 | 11.9 | -- | 0.541 | -1.01 | -- | -- | 0.109 | 6.94 | 22.18 | 90 | -- | -- |
| 108.16 | 0.486 | 11.9 | -0.0154 | -- | -- | -- | -- | -0.0144 | -- | -- | -- | -- | -- |
| 71.21 | 0.395 | 11.9 | -- | 0.842 | -- | -- | -- | -0.0302 | 5.46 | -- | -- | -- | -- |
| 61.7 | 0.366 | 11.9 | -- | -- | -1.27 | -- | -- | 0.114 | -- | 23.54 | 245 | -- | -- |
| 108.17 | 0.485 | 11.9 | -- | -- | -- | -- | -- | -0.0127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 25 | 45.60 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 35 | 45.89 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 42 | 46.11 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 48 | 46.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 54 | 46.40 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 12 |
| 57 | 46.43 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 62 | 46.48 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 72 | 46.61 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 78 | 46.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 87 | 46.69 | temperature | 25 | 90 | > th | dose dependent | sin | 23 | NA |
| 98 | 46.75 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 18 |
| 106 | 46.77 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 123 | 46.87 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 11 |
| 138 | 46.94 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 160 | 47.03 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 182 | 47.10 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 15 |
| 230 | 47.20 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 15 |
| 491 | 47.95 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 621 | 48.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 664 | 48.72 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 765 | 49.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 844 | 49.33 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 950 | 49.67 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |