BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0798600 Os02g0798600|AK061689
(389 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0798600 Similar to RING finger protein 12 (LIM domain ... 768 0.0
Os05g0389600 Zinc finger, RING-type domain containing protein 154 1e-37
AK064352 150 2e-36
Os09g0535100 Zinc finger, RING-type domain containing protein 73 3e-13
Os08g0548300 Zinc finger, RING-type domain containing protein 72 1e-12
Os06g0192800 Similar to RING-H2 finger protein ATL1R (RING-... 69 5e-12
Os04g0571200 Zinc finger, RING-type domain containing protein 68 1e-11
Os09g0323100 Zinc finger, RING-type domain containing protein 67 2e-11
>Os02g0798600 Similar to RING finger protein 12 (LIM domain interacting RING
finger protein) (RING finger LIM domain-binding protein)
(R-LIM)
Length = 389
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/389 (96%), Positives = 375/389 (96%)
Query: 1 MPRGNFSNEVAYAEITSREGISHIGRDILEPAANNAETDTVCIPEVGGPVSESGFSSSQR 60
MPRGNFSNEVAYAEITSREGISHIGRDILEPAANNAETDTVCIPEVGGPVSESGFSSSQR
Sbjct: 1 MPRGNFSNEVAYAEITSREGISHIGRDILEPAANNAETDTVCIPEVGGPVSESGFSSSQR 60
Query: 61 ASERIMADLEAGEIAHGTSSTTIMSSERSDTSQSSLTSVLPATSTAPSTIGESLPDTVPS 120
ASERIMADLEAGEIAHGTSSTTIMSSERSDTSQSSLTSVLPATSTAPSTIGESLPDTVPS
Sbjct: 61 ASERIMADLEAGEIAHGTSSTTIMSSERSDTSQSSLTSVLPATSTAPSTIGESLPDTVPS 120
Query: 121 REDVPIFSGTQGEIGGNTLHDDMMSIFSNDGPARVRDSSSNEMRRSHRRVLWDTFSRRSS 180
REDVPIFSGTQGEIGGNTLHDDMMSIFSNDGPARVRDSSSNEMRRSHRRVLWDTFSRRSS
Sbjct: 121 REDVPIFSGTQGEIGGNTLHDDMMSIFSNDGPARVRDSSSNEMRRSHRRVLWDTFSRRSS 180
Query: 181 RGYLDSDTDDLGFYSRWLDLGDELFADEIEEARFFHRRRHGSIRVSQYSRSRIREHRRAV 240
RGYLDSDTDDLGFYSRWLDLGDELFADEIEEARFFHRRRHGSIRVSQYSRSRIREHRRAV
Sbjct: 181 RGYLDSDTDDLGFYSRWLDLGDELFADEIEEARFFHRRRHGSIRVSQYSRSRIREHRRAV 240
Query: 241 FDSGTDQSTVACPLGIHQIGRCTCDSFLXXXXXXXXXXXXXXVMLTEALFEVLDEIHRQP 300
FDSGTDQSTVACPLGIHQIGRCTCDSFL VMLTEALFEVLDEIHRQP
Sbjct: 241 FDSGTDQSTVACPLGIHQIGRCTCDSFLIAEESSARASISRIVMLTEALFEVLDEIHRQP 300
Query: 301 ASLSLSMVSAQAPESVVNSLPCKSYKKQTAQCSDDMEQCHICLTEYEDGDQIRSLPCKHE 360
ASLSLSMVSAQAPESVVNSLPCKSYKKQTAQCSDDMEQCHICLTEYEDGDQIRSLPCKHE
Sbjct: 301 ASLSLSMVSAQAPESVVNSLPCKSYKKQTAQCSDDMEQCHICLTEYEDGDQIRSLPCKHE 360
Query: 361 FHLLCVDKWLKEVHRVCPLCRGDVCEGAA 389
FHLLCVDKWLKEVHRVCPLCRGDVCEGAA
Sbjct: 361 FHLLCVDKWLKEVHRVCPLCRGDVCEGAA 389
>Os05g0389600 Zinc finger, RING-type domain containing protein
Length = 549
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 122/241 (50%), Gaps = 21/241 (8%)
Query: 159 SSNEMRRSHRRVLWDTFSRRSSRGYLDSDTDDLGFYSRWLDLGDELFADEIEEARFFHRR 218
S N R + ++ T S R+S LDS TD L + D +E F R
Sbjct: 313 SGNASARQNSAIMQRTNSERNSELQLDSSTDSA-------TLREANNRDLLERRSAFLER 365
Query: 219 RHGSIRVSQYSRSRIREHRRAVFDSGTDQSTVACPL-GIHQIGRCTCDSFL----XXXXX 273
R R+ R+ R R SG +C L G H+ G C C +
Sbjct: 366 R----RIRSQVRALQRLGSRYENLSGLSGHERSCILSGQHRTGNCNCRTSSRPGNSDEET 421
Query: 274 XXXXXXXXXVMLTEALFEVLDEIHRQPASLSL-----SMVSAQAPESVVNSLPCKSYKKQ 328
VML EALFEVLDEIH+Q A+LS S+ S AP+ VV LP K Y++
Sbjct: 422 NTRASISRIVMLAEALFEVLDEIHQQSAALSSRPSFSSIGSVPAPKEVVERLPVKVYRRS 481
Query: 329 TAQCSDDMEQCHICLTEYEDGDQIRSLPCKHEFHLLCVDKWLKEVHRVCPLCRGDVCEGA 388
+++ QC+ICL EY +GD +R LPC HEFHL CVDKWLKE+HRVCPLCRGDVC
Sbjct: 482 LKHQTEEAAQCYICLVEYAEGDCVRILPCNHEFHLTCVDKWLKEIHRVCPLCRGDVCRSN 541
Query: 389 A 389
A
Sbjct: 542 A 542
>AK064352
Length = 290
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 122/241 (50%), Gaps = 21/241 (8%)
Query: 159 SSNEMRRSHRRVLWDTFSRRSSRGYLDSDTDDLGFYSRWLDLGDELFADEIEEARFFHRR 218
S N R + ++ T S R+S LDS TD L + D +E F R
Sbjct: 54 SGNASARQNSAIMQRTNSERNSELQLDSSTDSA-------TLREANNRDLLERRSAFLER 106
Query: 219 RHGSIRVSQYSRSRIREHRRAVFDSGTDQSTVACPL-GIHQIGRCTCDSFL----XXXXX 273
R R+ R+ R R SG +C L G H+ G C C +
Sbjct: 107 R----RIRSQVRALQRLGSRYENLSGLSGHERSCILSGQHRTGNCNCRTSSRPGNSDEET 162
Query: 274 XXXXXXXXXVMLTEALFEVLDEIHRQPASLSL-----SMVSAQAPESVVNSLPCKSYKKQ 328
VML EALFEVLDEIH+Q A+LS S+ S AP+ VV LP K Y++
Sbjct: 163 NTRASISRIVMLAEALFEVLDEIHQQSAALSSRPSFSSIGSVPAPKEVVERLPVKVYRRS 222
Query: 329 TAQCSDDMEQCHICLTEYEDGDQIRSLPCKHEFHLLCVDKWLKEVHRVCPLCRGDVCEGA 388
+++ QC+ICL EY +GD +R LPC HEFHL CVDKWLKE+HRVCPLCRGDVC
Sbjct: 223 LKHQTEEAAQCYICLVEYAEGDCVRILPCNHEFHLTCVDKWLKEIHRVCPLCRGDVCRSN 282
Query: 389 A 389
A
Sbjct: 283 A 283
>Os09g0535100 Zinc finger, RING-type domain containing protein
Length = 325
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 315 SVVNSLPCKSYKKQTAQCSDDMEQCHICLTEYEDGDQIRSLPCKHEFHLLCVDKWLKEVH 374
+ + SLP +YK + Q + EQC IC E+EDG+ + +LPCKH +H C+++WL+ ++
Sbjct: 250 ATLASLPSVTYKAEGVQ-DGNTEQCVICRVEFEDGESLIALPCKHSYHPECINQWLQ-IN 307
Query: 375 RVCPLCRGDV 384
+VCP+C +V
Sbjct: 308 KVCPMCSAEV 317
>Os08g0548300 Zinc finger, RING-type domain containing protein
Length = 305
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 316 VVNSLPCKSYKKQTAQCSDDMEQCHICLTEYEDGDQIRSLPCKHEFHLLCVDKWLKEVHR 375
+ SLP +Y+ Q Q +MEQC IC E+E+G+ + +LPCKH +H C+++WL+ +++
Sbjct: 231 TLASLPSITYRAQDKQ-DGNMEQCVICRVEFEEGESLVALPCKHSYHSECINQWLQ-LNK 288
Query: 376 VCPLCRGDV 384
VCP+C +V
Sbjct: 289 VCPMCSAEV 297
>Os06g0192800 Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein
ATL8)
Length = 321
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 313 PESVVNSLPCKSYKKQTAQCSDDMEQCHICLTEYEDGDQIRSLP-CKHEFHLLCVDKWLK 371
P + + +LP Y K A ++ +C +CL+E DG+++R LP C H FH+ C+D W
Sbjct: 86 PAAALRALPVTVYAKPAAARGEEALECAVCLSEVADGEKVRMLPKCDHGFHVECIDMWFH 145
Query: 372 EVHRVCPLCRGDV 384
H CPLCR V
Sbjct: 146 S-HDTCPLCRAPV 157
>Os04g0571200 Zinc finger, RING-type domain containing protein
Length = 290
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 313 PESVVNSLPCKSYKKQTAQCSDDMEQCHICLTEYEDGDQIRSLPCKHEFHLLCVDKWLKE 372
PE V+ LP +YK + + ++C IC Y++ D++ LPC+H++H CV KWLK
Sbjct: 215 PEDVIALLPTSTYKIRIFSRKEKHDECVICCMTYKNRDRLTKLPCEHQYHQTCVTKWLK- 273
Query: 373 VHRVCPLCRGDV 384
+++VCP+C +V
Sbjct: 274 INKVCPVCNKEV 285
>Os09g0323100 Zinc finger, RING-type domain containing protein
Length = 414
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 339 CHICLTEYEDGDQIRSLPCKHEFHLLCVDKWLKEVHRVCPLCRGDV 384
C ICLT+Y D D++R LPC H FH+ CVDKWLK ++ VCPLC+ ++
Sbjct: 338 CCICLTKYGDDDELRELPCTHFFHVQCVDKWLK-INAVCPLCKTEI 382
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,357,721
Number of extensions: 569113
Number of successful extensions: 2557
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 2668
Number of HSP's successfully gapped: 13
Length of query: 389
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 286
Effective length of database: 11,657,759
Effective search space: 3334119074
Effective search space used: 3334119074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)