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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0571200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.49 (0.044) R2 : 0.213
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.46 (0.134) R2dE : 0.24 R2E : 0.175
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.397 (0.0969) R2dN8 : 0.0381 R2N8 : -0.0268
σ : 0.816
deviance : 307.1
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.7
memory length : 21270
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
299.1 0.813 4.48 0.574 0.319 -1.28 0.617 0.033 -0.278 22.7 20.79 5306 -- --
299.1 0.805 4.48 0.58 0.319 -1.29 0.615 -- -0.277 22.7 20.79 5307 -- --
300.25 0.807 4.48 0.557 0.344 -1.29 -- -0.0806 -0.278 21.7 20.76 5477 -- --
300.26 0.807 4.48 0.542 0.342 -1.28 -- -- -0.286 21.8 20.8 5481 -- --
306.86 0.816 4.48 0.539 -- -1.28 -- 0.0432 -0.281 -- 20.7 5300 -- --
329.64 0.851 4.39 1.41 0.362 -- 0.639 -- 0.118 22.8 -- -- -- --
331.14 0.852 4.39 1.38 0.367 -- -- -- 0.117 22.2 -- -- -- --
306.81 0.816 4.47 0.536 -- -1.33 -- -- -0.288 -- 20.7 5302 -- --
300.18 0.807 4.5 -- 0.321 -1.39 -- -- -0.345 21.8 19.5 21534 -- --
339.33 0.861 4.38 1.39 -- -- -- -- 0.118 -- -- -- -- --
381.44 0.914 4.43 -- 0.375 -- -- -- -0.0364 22.4 -- -- -- --
307.1 0.816 4.49 -- -- -1.46 -- -- -0.397 -- 19.7 21270 -- --
390.05 0.922 4.42 -- -- -- -- -- -0.0357 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 288.07 atmosphere 1005 14400 < th dose independent rect. 17 1
2 288.34 atmosphere 1005 14400 > th dose independent rect. 17 1
15 293.26 temperature 25 4320 < th dose dependent rect. 14 1
16 293.45 temperature 25 4320 < th dose independent rect. 14 1
20 293.92 temperature 25 4320 > th dose independent rect. 14 2
28 294.43 radiation 40 14400 < th dose dependent rect. 18 10
32 294.58 atmosphere 1005 43200 > th dose dependent rect. 23 1
36 294.65 radiation 40 14400 < th dose dependent rect. 18 8
49 294.82 humidity 80 43200 > th dose independent rect. 10 1
56 294.90 atmosphere 1005 43200 > th dose dependent rect. 13 1
61 294.94 wind 3 43200 > th dose independent rect. 8 4
62 294.95 atmosphere 1010 43200 < th dose independent rect. 22 1
67 294.97 wind 3 43200 < th dose independent rect. 10 1
68 294.97 wind 3 43200 > th dose independent rect. 10 2
75 295.00 humidity 60 43200 < th dose dependent rect. 23 10
84 295.04 atmosphere 1005 43200 > th dose dependent rect. 13 13
138 295.17 humidity 80 43200 > th dose dependent rect. 11 1
145 295.18 humidity 80 43200 < th dose independent rect. 10 1
148 295.19 atmosphere 1005 43200 > th dose dependent sin 16 NA
149 295.19 radiation 40 14400 < th dose dependent rect. 18 2
153 295.20 humidity 90 43200 < th dose independent rect. 8 9
158 295.21 humidity 80 43200 > th dose dependent rect. 9 3
235 295.32 atmosphere 1010 43200 < th dose independent rect. 9 1
248 295.34 wind 3 43200 < th dose independent rect. 8 4
283 295.38 atmosphere 1010 43200 < th dose independent rect. 6 2
311 295.41 temperature 25 4320 < th dose independent rect. 9 7
366 295.45 atmosphere 1005 43200 > th dose dependent rect. 19 22
372 295.46 atmosphere 1005 43200 > th dose dependent no NA NA
394 295.47 atmosphere 1005 43200 > th dose dependent rect. 16 23
397 295.48 wind 1 43200 > th dose dependent rect. 10 1
412 295.49 temperature 25 4320 > th dose independent rect. 9 7
489 295.55 wind 3 43200 > th dose independent rect. 8 1
522 295.58 humidity 90 43200 < th dose independent rect. 15 2
539 295.60 atmosphere 1010 43200 > th dose independent rect. 9 1
582 295.65 wind 3 43200 < th dose independent rect. 8 1
638 295.73 humidity 90 43200 < th dose independent rect. 9 3
676 295.79 radiation 30 14400 > th dose independent rect. 7 1
694 295.79 atmosphere 1005 43200 > th dose dependent rect. 8 1
697 295.79 radiation 20 4320 > th dose dependent rect. 16 16
705 295.81 wind 9 43200 < th dose dependent rect. 10 1
752 295.88 humidity 90 43200 > th dose independent rect. 7 10
757 295.89 atmosphere 1010 43200 > th dose independent rect. 6 1
775 295.92 atmosphere 1010 43200 < th dose independent rect. 21 13
783 295.93 atmosphere 1010 43200 > th dose independent rect. 21 1
808 295.98 humidity 90 43200 > th dose independent rect. 5 13
811 295.99 humidity 90 4320 < th dose independent rect. 15 2
827 296.01 humidity 60 43200 < th dose independent rect. 20 13
843 296.03 temperature 25 43200 < th dose dependent rect. 14 2
924 296.11 radiation 1 43200 > th dose independent rect. 18 11
927 296.11 humidity 80 43200 > th dose dependent rect. 9 8
945 296.14 atmosphere 1010 43200 < th dose independent sin 7 NA
946 296.14 humidity 90 43200 > th dose independent rect. 7 5
951 296.14 wind 1 43200 > th dose dependent rect. 8 4