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Os08g0548300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0212) R2 : 0.00436
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0631 (0.0446) R2dN8 : 0.00564 R2N8 : 0.00436
σ : 0.399
deviance : 73.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.28 0.291 10.8 -0.433 0.54 0.844 0.267 -2.97 -0.121 7.16 25.43 1215 -- --
41 0.298 10.7 0.298 0.509 0.53 0.279 -- 0.0539 7.11 25.33 1248 -- --
38.47 0.289 10.8 -0.429 0.541 0.846 -- -2.98 -0.126 7.16 25.36 1214 -- --
41.23 0.299 10.7 0.308 0.522 0.528 -- -- 0.0565 7.02 25.4 1251 -- --
52.58 0.338 10.8 -0.352 -- 0.805 -- -2.4 -0.146 -- 24.21 1301 -- --
51.54 0.337 10.7 0.471 0.538 -- 0.32 -- 0.107 6.39 -- -- -- --
51.79 0.337 10.7 0.475 0.539 -- -- -- 0.106 6.36 -- -- -- --
55.06 0.346 10.7 0.313 -- 0.553 -- -- 0.0502 -- 24.85 1319 -- --
43.53 0.307 10.7 -- 0.514 0.597 -- -- 0.00895 7.03 25.15 1278 -- --
66.88 0.382 10.7 0.489 -- -- -- -- 0.117 -- -- -- -- --
57.73 0.355 10.7 -- 0.546 -- -- -- 0.053 6.31 -- -- -- --
57.18 0.352 10.7 -- -- 0.628 -- -- -0.0204 -- 23.9 1331 -- --
73.19 0.399 10.7 -- -- -- -- -- 0.0631 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.12 radiation 1.0 270 < th dose dependent rect. 5 21
2 38.66 radiation 1.0 270 < th dose independent rect. 5 21
3 39.07 wind 3.0 90 < th dose dependent rect. 3 8
4 39.10 wind 3.0 270 < th dose dependent rect. 3 2
5 39.15 wind 3.0 90 < th dose dependent rect. 3 6
6 39.15 temperature 20.0 10 > th dose dependent rect. 16 16
8 39.33 temperature 20.0 90 > th dose dependent rect. 15 17
10 39.37 radiation 40.0 43200 > th dose independent rect. 10 1
14 39.44 temperature 10.0 270 > th dose dependent rect. 14 16
15 39.44 temperature 25.0 1440 > th dose dependent rect. 5 18
21 39.48 temperature 25.0 1440 > th dose dependent rect. 9 14
27 39.49 temperature 25.0 1440 > th dose dependent rect. 15 21
28 39.49 temperature 25.0 1440 > th dose dependent rect. 13 23
34 39.51 temperature 25.0 1440 > th dose dependent rect. 6 13
43 39.52 temperature 25.0 1440 > th dose dependent rect. 16 1
58 39.53 temperature 25.0 1440 > th dose dependent rect. 15 19
60 39.54 temperature 25.0 1440 > th dose dependent sin 22 NA
72 39.55 wind 3.0 270 < th dose dependent rect. 1 6
74 39.55 temperature 25.0 1440 > th dose dependent rect. 9 9
82 39.55 temperature 25.0 1440 > th dose dependent rect. 9 23
113 39.59 temperature 25.0 1440 > th dose dependent no NA NA
123 39.59 temperature 25.0 1440 > th dose dependent rect. 21 22
125 39.59 temperature 25.0 1440 > th dose dependent rect. 11 23
201 39.69 wind 5.0 43200 > th dose dependent rect. 13 3
210 39.70 temperature 10.0 30 > th dose dependent rect. 4 17
215 39.71 radiation 40.0 43200 < th dose independent rect. 10 1
225 39.74 temperature 25.0 1440 > th dose dependent rect. 15 8
235 39.76 temperature 25.0 1440 > th dose dependent rect. 15 3
249 39.79 temperature 25.0 1440 > th dose dependent rect. 13 10
254 39.81 temperature 25.0 4320 > th dose independent rect. 17 1
256 39.82 radiation 30.0 43200 > th dose dependent rect. 10 1
274 39.84 temperature 25.0 720 > th dose dependent rect. 18 14
299 39.89 temperature 25.0 1440 > th dose dependent rect. 13 5
356 40.01 temperature 25.0 4320 < th dose independent rect. 17 1
362 40.02 wind 1.0 43200 < th dose dependent rect. 24 2
364 40.02 wind 5.0 43200 > th dose dependent rect. 12 8
406 40.10 temperature 10.0 30 > th dose dependent rect. 4 19
445 40.19 precipitation 0.1 270 < th dose independent rect. 15 15
451 40.19 precipitation 0.1 270 < th dose dependent rect. 15 15
452 40.19 temperature 10.0 270 > th dose dependent rect. 1 20
453 40.20 radiation 20.0 43200 < th dose independent rect. 8 1
479 40.26 temperature 25.0 720 > th dose dependent rect. 18 5
497 40.27 radiation 40.0 43200 < th dose independent rect. 3 9
501 40.28 humidity 60.0 14400 < th dose independent rect. 17 1
550 40.34 humidity 80.0 43200 < th dose independent rect. 4 1
555 40.35 humidity 60.0 14400 > th dose independent rect. 17 1
556 40.35 wind 5.0 43200 > th dose independent rect. 11 5
562 40.36 radiation 40.0 43200 > th dose independent rect. 7 4
563 40.36 radiation 20.0 43200 < th dose independent rect. 6 4
576 40.36 radiation 20.0 43200 < th dose independent rect. 23 11
579 40.36 radiation 20.0 43200 < th dose independent rect. 21 13
595 40.37 wind 5.0 43200 < th dose independent rect. 10 7
612 40.37 temperature 25.0 1440 > th dose dependent rect. 13 1
614 40.37 wind 3.0 90 < th dose dependent rect. 3 17
621 40.39 wind 5.0 43200 > th dose independent rect. 10 7
632 40.41 wind 9.0 43200 < th dose dependent rect. 10 5
640 40.43 wind 5.0 43200 < th dose independent rect. 11 5
643 40.43 wind 9.0 43200 < th dose dependent rect. 11 3
677 40.46 humidity 80.0 43200 < th dose dependent rect. 22 1
734 40.51 wind 3.0 90 < th dose dependent rect. 3 14
758 40.52 radiation 1.0 14400 < th dose dependent rect. 2 3
780 40.53 wind 7.0 43200 < th dose independent rect. 13 4
781 40.53 wind 3.0 270 < th dose independent rect. 1 6
807 40.54 radiation 1.0 1440 < th dose dependent rect. 22 7
811 40.55 wind 3.0 270 < th dose independent rect. 2 4
827 40.56 humidity 80.0 14400 > th dose independent rect. 3 1
833 40.56 humidity 80.0 43200 < th dose dependent rect. 21 3
844 40.58 wind 7.0 43200 > th dose independent rect. 14 2
846 40.58 wind 5.0 43200 > th dose independent rect. 10 11
847 40.58 humidity 60.0 14400 < th dose independent rect. 17 16
854 40.58 humidity 80.0 43200 < th dose dependent rect. 21 9
859 40.59 wind 5.0 43200 < th dose independent rect. 10 11
862 40.59 radiation 40.0 43200 > th dose dependent sin 9 NA
864 40.59 humidity 80.0 43200 < th dose dependent rect. 21 5
890 40.60 wind 7.0 43200 < th dose independent rect. 5 12
896 40.61 radiation 40.0 43200 < th dose independent sin 8 NA
898 40.61 humidity 80.0 43200 < th dose independent rect. 21 2
905 40.61 wind 3.0 43200 < th dose dependent rect. 9 2
932 40.63 radiation 20.0 43200 > th dose independent rect. 8 1
940 40.64 radiation 20.0 43200 < th dose independent sin 10 NA
967 40.65 wind 7.0 43200 > th dose independent rect. 5 12
989 40.67 radiation 1.0 14400 < th dose dependent rect. 4 1