Os05g0389600 - FiT-DB

FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0389600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.02	(0.202)	R²	:	0.401
β₁	:	10.9	(1.87)	R²_dD	:	9.78	R²_D	:	-14.4
β₂	:	0.685	(0.0958)	R²_dC	:	0.0762	R²_C	:	-2.36
β₃	:	-12.1	(1.97)	R²_dE	:	17.9	R²_E	:	-22.9
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	121	(18.6)	R²_dD*E	:	30.5	R²_D*E	:	-23
γ₁	:	0.214	(0.0762)	R²_dN8	:	0.0139	R²_N8	:	-2.34
σ	:	0.657
deviance	:	199.29
__

_____

C
peak time of C	:	4.28
E
wheather	:	temperature
threshold	:	30.4
memory length	:	842
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	18
open length of G	:	3.95

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
191.93	0.651	2.03	10.8	0.685	-12	-1.64	121	0.208	4.17	30.4	835	18	1.95
229.84	0.712	3.33	-1.19	1.32	0.458	-0.839	--	0.0841	5.15	-74.02	47520	16.2	6.37
199.29	0.657	2.02	10.9	0.685	-12.1	--	121	0.214	4.28	30.4	842	18	3.95
231.55	0.713	3.33	-1.19	1.34	0.484	--	--	0.0871	5.26	-74.02	47520	16.2	6.37
223.19	0.696	2	11	--	-12	--	123	0.256	--	30.4	879	18	4.33
236.19	0.72	3.34	-1.18	1.02	--	-0.979	--	0.103	4.42	--	--	--	--
238.76	0.724	3.33	-1.17	1.01	--	--	--	0.108	4.51	--	--	--	--
244.65	0.732	3.35	-1.16	--	-0.67	--	--	0.109	--	-360.3	8725	9.63	13.6
254.53	0.743	3.26	--	1.01	-0.718	--	--	0.448	4.47	-31.55	47520	19.8	9.52
293.46	0.8	3.34	-1.13	--	--	--	--	0.135	--	--	--	--	--
274.81	0.775	3.31	--	0.99	--	--	--	0.238	4.54	--	--	--	--
280.22	0.782	3.33	--	--	0.935	--	--	0.206	--	8.63	47520	1.43	6.86
327.16	0.844	3.31	--	--	--	--	--	0.26	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	195.42	temperature	30.0	720	> th	dose dependent	rect.	18	1
15	196.25	humidity	50.0	1440	< th	dose independent	rect.	16	1
16	196.60	humidity	50.0	1440	< th	dose dependent	rect.	16	1
17	197.26	wind	1.0	90	< th	dose independent	rect.	4	1
33	198.13	wind	1.0	90	< th	dose dependent	rect.	4	1
34	200.19	humidity	90.0	270	> th	dose independent	rect.	1	4
35	201.43	humidity	70.0	720	< th	dose independent	rect.	19	13
36	201.59	humidity	90.0	90	> th	dose dependent	rect.	3	2
38	201.70	humidity	50.0	1440	> th	dose independent	rect.	16	1
40	202.21	humidity	80.0	90	> th	dose dependent	rect.	3	8
42	202.48	wind	3.0	10	< th	dose dependent	rect.	4	3
44	202.83	wind	3.0	90	< th	dose dependent	rect.	3	4
45	202.90	humidity	80.0	90	> th	dose dependent	rect.	3	5
50	203.43	humidity	70.0	720	< th	dose dependent	rect.	19	13
57	203.72	humidity	90.0	90	> th	dose dependent	rect.	3	18
62	203.95	humidity	90.0	90	> th	dose dependent	rect.	3	14
85	204.85	humidity	60.0	10	> th	dose dependent	rect.	4	5
88	204.99	humidity	90.0	90	> th	dose independent	rect.	4	1
95	205.16	atmosphere	1005.0	10	> th	dose independent	rect.	4	3
97	205.36	humidity	90.0	270	> th	dose independent	rect.	24	9
98	205.39	humidity	70.0	720	< th	dose independent	rect.	19	1
136	205.87	humidity	70.0	720	< th	dose dependent	rect.	19	1
152	206.04	humidity	90.0	90	> th	dose independent	rect.	3	8
158	206.24	atmosphere	1005.0	90	> th	dose independent	rect.	3	4
170	206.62	temperature	25.0	270	< th	dose independent	rect.	1	4
171	206.63	humidity	90.0	270	> th	dose independent	rect.	24	19
185	206.94	humidity	90.0	90	> th	dose independent	rect.	3	6
190	207.00	temperature	25.0	90	< th	dose independent	rect.	4	1
195	207.07	humidity	90.0	10	> th	dose independent	rect.	4	2
205	207.19	wind	7.0	90	< th	dose independent	rect.	7	20
214	207.35	humidity	90.0	10	> th	dose dependent	rect.	4	2
217	207.40	temperature	30.0	720	> th	dose independent	rect.	18	1
232	207.44	humidity	80.0	10	> th	dose dependent	rect.	4	8
235	207.49	temperature	20.0	10	> th	dose independent	rect.	4	3
247	207.70	atmosphere	1005.0	270	> th	dose independent	rect.	3	2
248	207.70	atmosphere	1005.0	10	> th	dose independent	rect.	4	5
270	208.04	radiation	20.0	10	< th	dose independent	rect.	4	5
290	208.29	humidity	60.0	720	< th	dose independent	rect.	18	15
291	208.30	humidity	90.0	10	> th	dose independent	rect.	4	4
293	208.32	radiation	40.0	10	< th	dose dependent	rect.	4	5
325	208.66	humidity	70.0	10	> th	dose independent	rect.	4	5
343	208.77	humidity	90.0	90	> th	dose independent	rect.	3	14
369	208.86	humidity	90.0	10	> th	dose independent	rect.	4	8
375	208.92	humidity	90.0	90	> th	dose independent	rect.	3	18
379	208.97	wind	9.0	270	< th	dose independent	rect.	5	22
388	209.10	humidity	70.0	720	> th	dose independent	rect.	19	8
407	209.25	humidity	90.0	90	> th	dose independent	rect.	3	16
414	209.34	temperature	10.0	90	> th	dose dependent	rect.	3	4
426	209.49	humidity	50.0	10	> th	dose independent	rect.	7	21
453	209.66	temperature	15.0	10	> th	dose dependent	rect.	4	3
476	209.78	wind	1.0	30	< th	dose independent	rect.	4	8
496	209.88	humidity	90.0	90	> th	dose dependent	sin	3	NA
530	210.19	temperature	20.0	90	> th	dose dependent	rect.	4	1
549	210.27	wind	9.0	90	< th	dose dependent	rect.	7	20
574	210.40	humidity	50.0	10	> th	dose independent	rect.	9	19
589	210.45	wind	7.0	10	< th	dose independent	rect.	9	19
592	210.46	precipitation	0.1	90	< th	dose independent	rect.	3	4
594	210.46	precipitation	0.1	90	< th	dose dependent	rect.	3	4
596	210.49	temperature	20.0	90	> th	dose independent	rect.	4	1
597	210.49	temperature	30.0	1440	< th	dose independent	rect.	18	14
622	210.66	radiation	20.0	90	< th	dose independent	rect.	3	4
649	210.89	humidity	60.0	1440	> th	dose independent	rect.	18	10
654	210.93	temperature	30.0	1440	< th	dose independent	rect.	18	4
660	210.95	temperature	10.0	270	> th	dose dependent	rect.	3	2
663	210.96	precipitation	0.1	10	< th	dose independent	rect.	4	3
664	210.96	precipitation	0.1	10	< th	dose dependent	rect.	4	3
670	210.98	temperature	10.0	90	> th	dose independent	rect.	3	4
673	210.98	humidity	50.0	90	> th	dose independent	rect.	3	4
676	210.98	atmosphere	1015.0	90	< th	dose independent	rect.	3	4
678	210.98	temperature	10.0	90	> th	dose independent	rect.	7	20
698	211.05	wind	1.0	270	> th	dose independent	rect.	3	1
700	211.05	temperature	10.0	10	> th	dose independent	rect.	4	3
702	211.05	temperature	30.0	10	< th	dose independent	rect.	4	3
703	211.05	humidity	50.0	10	> th	dose independent	rect.	4	3
707	211.05	atmosphere	1015.0	10	< th	dose independent	rect.	4	3
708	211.05	radiation	20.0	10	< th	dose independent	rect.	4	3
712	211.05	temperature	10.0	10	> th	dose independent	rect.	7	21
727	211.12	atmosphere	995.0	10	> th	dose dependent	rect.	4	3
738	211.18	precipitation	0.1	270	< th	dose independent	rect.	3	2
739	211.18	precipitation	0.1	270	< th	dose dependent	rect.	3	2
741	211.19	temperature	30.0	1440	< th	dose independent	rect.	18	8
747	211.23	humidity	90.0	270	> th	dose independent	sin	7	NA
762	211.31	humidity	60.0	1440	> th	dose independent	rect.	18	13
767	211.34	humidity	60.0	1440	> th	dose independent	rect.	18	2
783	211.40	temperature	10.0	90	> th	dose dependent	rect.	7	20
803	211.45	atmosphere	1010.0	90	< th	dose independent	rect.	7	20
813	211.48	precipitation	0.1	90	< th	dose independent	rect.	7	20
814	211.48	precipitation	0.1	90	< th	dose dependent	rect.	7	20
815	211.49	humidity	90.0	270	< th	dose independent	sin	7	NA
825	211.55	humidity	50.0	1440	< th	dose independent	rect.	16	19
837	211.59	humidity	50.0	1440	> th	dose independent	rect.	16	18
838	211.59	precipitation	0.1	10	< th	dose independent	rect.	7	21
840	211.59	precipitation	0.1	10	< th	dose dependent	rect.	7	21
875	211.72	wind	5.0	270	< th	dose independent	rect.	3	2
907	211.82	atmosphere	995.0	10	> th	dose dependent	rect.	4	5
931	211.91	atmosphere	995.0	270	> th	dose dependent	rect.	3	2
964	212.02	radiation	1.0	270	< th	dose dependent	rect.	3	2
987	212.14	atmosphere	995.0	90	> th	dose dependent	rect.	3	4