Os09g0323100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os09g0323100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.98 | 0.261 | 11.4 | -0.804 | 0.5 | -0.454 | 0.352 | 0.319 | -0.232 | 6.1 | 29.88 | 4998 | -- | -- |
| 30.98 | 0.259 | 11.4 | -0.745 | 0.501 | -0.418 | 0.353 | -- | -0.239 | 6.1 | 29.79 | 4990 | -- | -- |
| 31.28 | 0.26 | 11.4 | -0.805 | 0.502 | -0.455 | -- | 0.339 | -0.233 | 6.11 | 29.88 | 5004 | -- | -- |
| 31.28 | 0.261 | 11.4 | -0.74 | 0.502 | -0.416 | -- | -- | -0.24 | 6.12 | 29.7 | 5000 | -- | -- |
| 42.31 | 0.303 | 11.4 | -0.842 | -- | -0.442 | -- | 0.453 | -0.264 | -- | 29.7 | 5667 | -- | -- |
| 37.83 | 0.288 | 11.4 | -0.626 | 0.483 | -- | 0.346 | -- | -0.289 | 5.82 | -- | -- | -- | -- |
| 38.12 | 0.289 | 11.4 | -0.624 | 0.485 | -- | -- | -- | -0.291 | 5.84 | -- | -- | -- | -- |
| 42.46 | 0.303 | 11.4 | -0.765 | -- | -0.396 | -- | -- | -0.27 | -- | 29.8 | 5679 | -- | -- |
| 44.82 | 0.312 | 11.3 | -- | 0.484 | -0.281 | -- | -- | -0.156 | 6.11 | 30.39 | 5032 | -- | -- |
| 50.34 | 0.332 | 11.4 | -0.609 | -- | -- | -- | -- | -0.279 | -- | -- | -- | -- | -- |
| 48.37 | 0.325 | 11.4 | -- | 0.476 | -- | -- | -- | -0.221 | 5.91 | -- | -- | -- | -- |
| 55.82 | 0.348 | 11.4 | -- | -- | -0.268 | -- | -- | -0.162 | -- | 30.7 | 5652 | -- | -- |
| 60.12 | 0.362 | 11.4 | -- | -- | -- | -- | -- | -0.212 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.87 | temperature | 25.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 2 | 30.02 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 6 | 30.68 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 25 | 31.03 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 26 | 31.05 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 28 | 31.07 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 35 | 31.13 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 36 | 31.14 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 39 | 31.16 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 41 | 31.16 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 43 | 31.18 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 48 | 31.22 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 11 |
| 50 | 31.22 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 53 | 31.23 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 54 | 31.23 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 59 | 31.23 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 15 |
| 60 | 31.23 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 69 | 31.25 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 76 | 31.26 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 85 | 31.27 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 8 |
| 96 | 31.28 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 97 | 31.28 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 106 | 31.28 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 111 | 31.29 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 2 | 5 |
| 122 | 31.30 | wind | 7.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 126 | 31.30 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 141 | 31.32 | radiation | 1.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 169 | 31.34 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 176 | 31.34 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 191 | 31.35 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 195 | 31.35 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 197 | 31.35 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 272 | 31.39 | wind | 7.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 274 | 31.39 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 288 | 31.40 | radiation | 1.0 | 1440 | > th | dose independent | sin | 21 | NA |
| 290 | 31.40 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 327 | 31.42 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 404 | 31.46 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 442 | 31.47 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 544 | 31.51 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 580 | 31.53 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 621 | 31.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 647 | 31.57 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 21 |
| 652 | 31.57 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 664 | 31.58 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 667 | 31.58 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 679 | 31.59 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 703 | 31.59 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 2 | 23 |
| 743 | 31.61 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 788 | 31.63 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 24 | 16 |
| 837 | 31.65 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 840 | 31.65 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 847 | 31.65 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 10 | 18 |
| 876 | 31.66 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 15 |
| 910 | 31.67 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 22 | NA |