Os01g0667700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os01g0667700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.09 | 0.205 | 9.9 | 0.597 | 0.612 | 0.427 | 0.113 | -1.42 | 0.136 | 2.57 | 29.2 | 205 | -- | -- |
| 20.77 | 0.212 | 9.92 | 0.345 | 0.586 | 0.491 | -0.291 | -- | 0.0902 | 2.77 | 27.6 | 131 | -- | -- |
| 19.13 | 0.204 | 9.9 | 0.584 | 0.613 | 0.428 | -- | -1.3 | 0.135 | 2.56 | 28.71 | 207 | -- | -- |
| 21 | 0.213 | 9.92 | 0.35 | 0.612 | 0.475 | -- | -- | 0.0814 | 2.73 | 26.76 | 138 | -- | -- |
| 33.58 | 0.27 | 9.88 | 0.675 | -- | 1.21 | -- | -1.43 | 0.211 | -- | 41.93 | 22 | -- | -- |
| 23.95 | 0.229 | 9.95 | 0.225 | 0.732 | -- | -0.256 | -- | -0.023 | 2.82 | -- | -- | -- | -- |
| 24.17 | 0.23 | 9.95 | 0.231 | 0.731 | -- | -- | -- | -0.0214 | 2.79 | -- | -- | -- | -- |
| 34.47 | 0.273 | 9.9 | 0.479 | -- | 1.01 | -- | -- | 0.187 | -- | 29.6 | 50 | -- | -- |
| 23.9 | 0.229 | 9.94 | -- | 0.651 | 0.321 | -- | -- | 0.0149 | 2.92 | 26.64 | 163 | -- | -- |
| 55.12 | 0.347 | 9.94 | 0.262 | -- | -- | -- | -- | -0.00276 | -- | -- | -- | -- | -- |
| 25.58 | 0.237 | 9.95 | -- | 0.735 | -- | -- | -- | -0.0471 | 2.8 | -- | -- | -- | -- |
| 40.33 | 0.297 | 9.92 | -- | -- | 0.869 | -- | -- | 0.111 | -- | 29.7 | 37 | -- | -- |
| 56.93 | 0.352 | 9.95 | -- | -- | -- | -- | -- | -0.0318 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.24 | humidity | 60 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 3 | 18.26 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 6 | 18.29 | humidity | 60 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 7 | 18.29 | humidity | 70 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 20 | 18.37 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 23 | 18.38 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 19 |
| 28 | 18.40 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 32 | 18.40 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 20 |
| 39 | 18.42 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 17 |
| 43 | 18.43 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 52 | 18.44 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 57 | 18.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 70 | 18.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 79 | 18.47 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 83 | 18.47 | radiation | 30 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 95 | 18.49 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 107 | 18.49 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 123 | 18.50 | humidity | 50 | 43200 | < th | dose independent | rect. | 9 | 8 |
| 131 | 18.50 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 137 | 18.50 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 18 |
| 139 | 18.51 | humidity | 70 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 159 | 18.51 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 169 | 18.52 | humidity | 50 | 43200 | > th | dose independent | sin | 22 | NA |
| 209 | 18.53 | radiation | 30 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 250 | 18.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 308 | 18.55 | humidity | 50 | 43200 | > th | dose independent | sin | 11 | NA |
| 311 | 18.55 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 312 | 18.55 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 325 | 18.55 | radiation | 30 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 372 | 18.56 | humidity | 50 | 43200 | < th | dose independent | sin | 21 | NA |
| 375 | 18.56 | humidity | 70 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 462 | 18.57 | humidity | 60 | 43200 | > th | dose independent | sin | 6 | NA |
| 472 | 18.57 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 546 | 18.58 | humidity | 50 | 43200 | > th | dose independent | no | NA | NA |
| 549 | 18.58 | humidity | 60 | 43200 | < th | dose independent | sin | 6 | NA |
| 608 | 18.58 | humidity | 50 | 43200 | > th | dose independent | rect. | 2 | 22 |
| 618 | 18.58 | wind | 9 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 704 | 18.59 | humidity | 70 | 43200 | < th | dose dependent | rect. | 17 | 20 |
| 765 | 18.60 | humidity | 70 | 43200 | < th | dose dependent | sin | 4 | NA |
| 767 | 18.60 | humidity | 70 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 842 | 18.61 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 15 |
| 846 | 18.61 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 17 |
| 915 | 18.62 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 15 |
| 925 | 18.63 | humidity | 50 | 43200 | < th | dose independent | no | NA | NA |
| 979 | 18.63 | humidity | 50 | 43200 | < th | dose independent | rect. | 12 | 23 |