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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0173900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.51 (0.0364) R2 : 0.154
β1 : 1.17 (0.133) R2dD : 0.149 R2D : 0.115
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.307 (0.0776) R2dN8 : 0.0388 R2N8 : 0.00456
σ : 0.683
deviance : 213.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
178.21 0.627 5.69 -0.581 0.477 1.38 -1.9 -8.41 0.297 16.1 29.14 1390 -- --
185.05 0.634 5.49 1.07 0.529 0.531 -1.43 -- 0.375 15.4 24.74 2979 -- --
187.98 0.639 5.68 -0.553 0.474 1.4 -- -8.22 0.304 15.3 29.18 1353 -- --
191.3 0.644 5.53 0.959 0.545 0.478 -- -- 0.214 16 25.21 7057 -- --
198.32 0.656 5.68 -0.39 -- 1.38 -- -7.9 0.139 -- 28.06 1741 -- --
192.34 0.65 5.51 1.21 0.446 -- -1.98 -- 0.329 16.3 -- -- -- --
202.98 0.667 5.51 1.19 0.433 -- -- -- 0.318 15.7 -- -- -- --
200.72 0.66 5.56 0.928 -- 0.592 -- -- 0.0873 -- 24.69 9088 -- --
188.4 0.639 5.63 -- 0.457 1.14 -- -- -0.176 15.6 14.74 29086 -- --
213.36 0.683 5.51 1.17 -- -- -- -- 0.307 -- -- -- -- --
240.28 0.725 5.54 -- 0.41 -- -- -- 0.186 15.7 -- -- -- --
199.8 0.658 5.62 -- -- 1.12 -- -- -0.18 -- 14.55 29200 -- --
249.57 0.737 5.54 -- -- -- -- -- 0.177 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 161.62 humidity 70.0 720 > th dose independent rect. 19 8
3 165.26 humidity 70.0 720 < th dose independent rect. 19 12
4 165.32 humidity 80.0 720 < th dose dependent rect. 18 5
7 165.43 humidity 70.0 720 < th dose independent rect. 19 1
21 165.63 temperature 30.0 720 > th dose dependent rect. 18 1
36 165.89 humidity 70.0 720 < th dose dependent rect. 19 12
37 165.96 humidity 70.0 720 < th dose dependent rect. 19 1
68 166.95 humidity 50.0 1440 < th dose independent rect. 16 1
71 167.10 humidity 50.0 1440 < th dose dependent rect. 16 1
78 168.26 humidity 50.0 720 > th dose dependent rect. 17 9
149 170.15 temperature 30.0 720 < th dose independent rect. 18 9
154 170.44 temperature 30.0 720 > th dose independent rect. 18 1
176 170.83 humidity 50.0 1440 > th dose independent rect. 16 1
179 170.96 atmosphere 1005.0 90 > th dose independent rect. 3 2
242 172.05 radiation 10.0 1440 < th dose dependent rect. 18 10
243 172.11 radiation 40.0 4320 < th dose dependent rect. 18 9
245 172.17 radiation 20.0 1440 < th dose dependent rect. 18 2
247 172.23 radiation 20.0 1440 < th dose dependent rect. 18 5
254 172.33 radiation 1.0 14400 < th dose dependent rect. 19 10
257 172.36 radiation 1.0 14400 < th dose dependent rect. 22 7
263 172.44 radiation 1.0 14400 > th dose independent rect. 9 1
276 172.63 wind 3.0 90 < th dose dependent rect. 3 2
281 172.74 radiation 1.0 14400 < th dose independent rect. 9 1
307 173.13 humidity 80.0 720 > th dose independent rect. 19 3
326 173.28 temperature 15.0 14400 > th dose independent rect. 9 1
330 173.35 humidity 90.0 4320 < th dose independent rect. 6 1
332 173.37 temperature 15.0 14400 < th dose independent rect. 21 16
336 173.39 radiation 40.0 1440 > th dose dependent rect. 13 20
337 173.40 temperature 15.0 14400 < th dose independent rect. 9 1
338 173.41 temperature 15.0 14400 > th dose independent rect. 22 3
340 173.44 wind 1.0 43200 < th dose independent rect. 20 8
343 173.50 wind 5.0 30 < th dose independent rect. 8 18
352 173.58 temperature 15.0 14400 < th dose independent rect. 4 9
354 173.60 temperature 15.0 14400 < th dose independent rect. 21 6
358 173.63 temperature 15.0 14400 > th dose independent rect. 5 8
362 173.64 radiation 1.0 720 > th dose independent rect. 18 11
370 173.68 temperature 25.0 4320 > th dose independent rect. 9 2
376 173.71 temperature 15.0 14400 < th dose independent rect. 24 13
378 173.74 temperature 25.0 4320 < th dose independent rect. 9 1
383 173.77 temperature 15.0 14400 > th dose independent rect. 24 1
389 173.78 radiation 40.0 1440 > th dose dependent rect. 13 1
394 173.80 radiation 40.0 1440 > th dose dependent rect. 13 3
415 173.83 temperature 15.0 14400 < th dose independent rect. 23 2
418 173.84 humidity 70.0 720 > th dose dependent rect. 19 2
437 173.93 temperature 15.0 14400 > th dose independent rect. 6 6
458 174.03 temperature 15.0 14400 < th dose independent sin 3 NA
494 174.15 radiation 1.0 720 > th dose independent rect. 18 1
574 174.42 temperature 15.0 14400 > th dose independent rect. 21 16
595 174.48 radiation 1.0 720 > th dose dependent rect. 18 11
607 174.54 temperature 15.0 14400 > th dose independent rect. 2 1
645 174.63 temperature 15.0 14400 < th dose independent rect. 9 21
651 174.65 wind 1.0 43200 > th dose independent rect. 20 8
652 174.65 temperature 15.0 14400 < th dose independent rect. 21 10
670 174.70 temperature 15.0 14400 > th dose independent rect. 9 19
671 174.71 temperature 20.0 14400 > th dose independent rect. 4 1
691 174.76 humidity 60.0 1440 > th dose independent rect. 18 5
696 174.77 temperature 25.0 90 < th dose independent rect. 3 2
718 174.81 wind 1.0 43200 < th dose dependent rect. 22 6
724 174.83 temperature 20.0 14400 < th dose independent rect. 4 1
725 174.83 wind 1.0 43200 > th dose independent rect. 22 6
732 174.84 humidity 70.0 720 > th dose independent rect. 17 14
734 174.85 wind 1.0 43200 > th dose independent rect. 3 1
777 174.89 temperature 15.0 14400 < th dose independent no NA NA
790 174.91 temperature 15.0 14400 < th dose independent rect. 4 23
797 174.92 temperature 15.0 14400 > th dose independent rect. 5 22
809 174.94 temperature 15.0 14400 < th dose independent rect. 24 23
811 174.95 temperature 15.0 14400 > th dose independent sin 1 NA
826 174.99 temperature 15.0 90 > th dose dependent rect. 3 2
845 175.01 precipitation 0.1 90 < th dose independent rect. 3 2
850 175.01 precipitation 0.1 90 < th dose dependent rect. 3 2
853 175.02 temperature 15.0 14400 < th dose independent rect. 2 23
860 175.04 precipitation 0.1 270 < th dose independent rect. 22 23
862 175.04 precipitation 0.1 270 < th dose dependent rect. 22 23
863 175.05 temperature 30.0 1440 < th dose independent rect. 18 4
905 175.14 humidity 60.0 720 > th dose dependent sin 15 NA
914 175.16 temperature 15.0 14400 > th dose independent rect. 24 13
936 175.18 radiation 40.0 14400 > th dose dependent rect. 15 17
937 175.19 radiation 30.0 14400 > th dose independent rect. 16 1
971 175.23 atmosphere 1005.0 10 > th dose independent rect. 3 3