Os06g0695600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os06g0695600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.47 | 0.374 | 8.11 | -1.47 | 0.412 | 1.86 | 0.54 | -2.08 | -0.374 | 13.8 | 10.52 | 1383 | -- | -- |
| 67.13 | 0.382 | 8.05 | -1.02 | 0.401 | 1.84 | 0.636 | -- | -0.253 | 13.8 | 7.524 | 1396 | -- | -- |
| 64.38 | 0.374 | 8.1 | -1.45 | 0.453 | 1.84 | -- | -2.14 | -0.367 | 13.4 | 11.14 | 1303 | -- | -- |
| 67.4 | 0.382 | 8.05 | -1.04 | 0.394 | 1.85 | -- | -- | -0.262 | 11.7 | -6.213 | 1968 | -- | -- |
| 71.15 | 0.393 | 8.11 | -1.47 | -- | 1.86 | -- | -2.04 | -0.378 | -- | 10.47 | 1720 | -- | -- |
| 124.7 | 0.524 | 7.97 | -0.433 | 0.297 | -- | 0.563 | -- | 0.0845 | 13.8 | -- | -- | -- | -- |
| 125.78 | 0.525 | 7.97 | -0.416 | 0.299 | -- | -- | -- | 0.0869 | 13.1 | -- | -- | -- | -- |
| 74.55 | 0.402 | 8.05 | -1.02 | -- | 1.85 | -- | -- | -0.259 | -- | 9.494 | 1733 | -- | -- |
| 91.38 | 0.445 | 8.01 | -- | 0.351 | 1.41 | -- | -- | -0.079 | 12.2 | 1.509 | 1875 | -- | -- |
| 131.32 | 0.535 | 7.98 | -0.428 | -- | -- | -- | -- | 0.081 | -- | -- | -- | -- | -- |
| 130.34 | 0.534 | 7.96 | -- | 0.306 | -- | -- | -- | 0.133 | 13.1 | -- | -- | -- | -- |
| 97.15 | 0.461 | 8.01 | -- | -- | 1.6 | -- | -- | -0.0519 | -- | 13.45 | 1720 | -- | -- |
| 136.14 | 0.545 | 7.96 | -- | -- | -- | -- | -- | 0.128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 7 | 58.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 12 | 59.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 33 | 60.82 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 47 | 61.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 57 | 61.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 63 | 61.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 80 | 62.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 83 | 62.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 88 | 62.13 | temperature | 10 | 1440 | > th | dose dependent | sin | 7 | NA |
| 89 | 62.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 15 |
| 114 | 62.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 15 |
| 152 | 62.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 13 |
| 170 | 62.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 252 | 62.63 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 515 | 63.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 576 | 63.54 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 640 | 63.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 646 | 63.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 695 | 63.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 996 | 64.39 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |