Os01g0159300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os01g0159300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 312.5 | 0.831 | 6.39 | -0.0936 | 1.4 | -0.385 | 0.58 | 14.8 | -0.239 | 7.6 | 31.2 | 648 | -- | -- |
| 321.13 | 0.835 | 6.56 | -1.16 | 1.39 | 1.1 | 0.723 | -- | -0.184 | 7.88 | 31.08 | 662 | -- | -- |
| 313.35 | 0.824 | 6.39 | -0.0716 | 1.39 | -0.427 | -- | 14.8 | -0.244 | 7.52 | 31.16 | 648 | -- | -- |
| 318.63 | 0.831 | 6.53 | -1.29 | 1.41 | 1.27 | -- | -- | -0.226 | 7.51 | 30.5 | 607 | -- | -- |
| 403.02 | 0.94 | 6.56 | -0.986 | -- | 0.167 | -- | 3.43 | -0.302 | -- | 31.16 | 648 | -- | -- |
| 349.62 | 0.877 | 6.56 | -1.15 | 1.06 | -- | -0.146 | -- | -0.35 | 7.71 | -- | -- | -- | -- |
| 349.67 | 0.876 | 6.56 | -1.15 | 1.06 | -- | -- | -- | -0.35 | 7.76 | -- | -- | -- | -- |
| 377.45 | 0.905 | 6.58 | -1.44 | -- | 0.79 | -- | -- | -0.298 | -- | 29.9 | 5828 | -- | -- |
| 362.77 | 0.887 | 6.5 | -- | 1.33 | 1.05 | -- | -- | -0.124 | 7.57 | 30.6 | 588 | -- | -- |
| 410.05 | 0.946 | 6.59 | -1.14 | -- | -- | -- | -- | -0.335 | -- | -- | -- | -- | -- |
| 384.62 | 0.917 | 6.53 | -- | 1.05 | -- | -- | -- | -0.222 | 7.83 | -- | -- | -- | -- |
| 425.23 | 0.96 | 6.53 | -- | -- | 0.639 | -- | -- | -0.0909 | -- | 30.3 | 5853 | -- | -- |
| 444.23 | 0.984 | 6.56 | -- | -- | -- | -- | -- | -0.208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 306.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 4 | 308.48 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 3 |
| 6 | 308.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 7 | 308.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 10 | 309.26 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 16 | 11 |
| 16 | 309.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 35 | 310.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 41 | 310.60 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 14 |
| 42 | 310.64 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 23 |
| 51 | 310.94 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 21 |
| 56 | 311.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 64 | 311.41 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 4 |
| 66 | 311.52 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 11 |
| 67 | 311.53 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 13 |
| 70 | 311.55 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 22 |
| 89 | 311.64 | temperature | 30 | 720 | < th | dose independent | sin | 22 | NA |
| 109 | 311.81 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 23 |
| 111 | 311.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 112 | 311.86 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 5 |
| 132 | 312.17 | temperature | 30 | 720 | > th | dose dependent | sin | 4 | NA |
| 137 | 312.24 | atmosphere | 1005 | 270 | > th | dose independent | sin | 16 | NA |
| 157 | 312.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 180 | 312.49 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 17 |
| 195 | 312.66 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 8 |
| 197 | 312.72 | temperature | 30 | 720 | > th | dose independent | sin | 4 | NA |
| 220 | 312.89 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 22 |
| 222 | 312.92 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 1 |
| 241 | 313.13 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 3 |
| 248 | 313.29 | humidity | 80 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 250 | 313.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 253 | 313.38 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 6 |
| 261 | 313.46 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 279 | 313.49 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 13 |
| 289 | 313.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 340 | 314.05 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 4 |
| 357 | 314.06 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 23 |
| 361 | 314.11 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 10 |
| 406 | 314.43 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 410 | 314.48 | humidity | 80 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 411 | 314.49 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 416 | 314.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 448 | 314.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 454 | 314.80 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 477 | 314.87 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 1 |
| 483 | 314.92 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 488 | 314.97 | temperature | 30 | 720 | > th | dose dependent | no | NA | NA |
| 632 | 315.14 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 634 | 315.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 714 | 315.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 749 | 315.85 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 775 | 316.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 782 | 316.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 783 | 316.07 | temperature | 30 | 720 | < th | dose independent | sin | 3 | NA |
| 797 | 316.13 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 890 | 316.13 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 896 | 316.14 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 19 |
| 944 | 316.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 961 | 316.38 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 21 |
| 981 | 316.44 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 13 |
| 990 | 316.48 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |