Os06g0125800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os06g0125800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.73 | 0.651 | 10.4 | -0.426 | 1.48 | 0.617 | -0.128 | -8.67 | 0.837 | 14.7 | 0.6142 | 4604 | 4.94 | 2.11 |
| 284.13 | 0.785 | 10.2 | -0.308 | 1.37 | 0.397 | 0.29 | -- | 0.847 | 14.8 | 4.417 | 2647 | 5.7 | 3.01 |
| 191.11 | 0.644 | 10.4 | -0.419 | 1.49 | 0.62 | -- | -8.59 | 0.83 | 14.7 | 0.5625 | 4621 | 4.95 | 2.13 |
| 262.05 | 0.754 | 10.2 | -0.126 | 1.41 | 1.2 | -- | -- | 0.865 | 14.4 | 3.307 | 2867 | 7.17 | 3.8 |
| 319.49 | 0.832 | 10.4 | -0.427 | -- | 0.634 | -- | -8.44 | 0.831 | -- | 0.5607 | 4622 | 4.94 | 2.13 |
| 289.66 | 0.798 | 10.1 | -0.0765 | 1.46 | -- | -0.152 | -- | 0.866 | 14.7 | -- | -- | -- | -- |
| 289.74 | 0.797 | 10.1 | -0.0802 | 1.46 | -- | -- | -- | 0.866 | 14.8 | -- | -- | -- | -- |
| 292.05 | 0.796 | 10.1 | -0.0362 | -- | 1.28 | -- | -- | 0.951 | -- | 12.97 | 893 | 5.58 | 2.18 |
| 253.68 | 0.742 | 10.2 | -- | 1.42 | 1.39 | -- | -- | 0.894 | 14.7 | 3.168 | 2912 | 8.4 | 3.08 |
| 413.45 | 0.95 | 10.2 | -0.142 | -- | -- | -- | -- | 0.828 | -- | -- | -- | -- | -- |
| 289.91 | 0.796 | 10.1 | -- | 1.46 | -- | -- | -- | 0.874 | 14.8 | -- | -- | -- | -- |
| 283.83 | 0.785 | 10.1 | -- | -- | 1.27 | -- | -- | 0.854 | -- | 20.78 | 814 | 5.67 | 3.48 |
| 413.98 | 0.95 | 10.2 | -- | -- | -- | -- | -- | 0.844 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 177.17 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 4 | 183.72 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 5 | 183.75 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 10 | 185.75 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 11 | 186.06 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 14 | 186.39 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 16 | 186.51 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 31 | 187.49 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 34 | 187.66 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 39 | 187.76 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 55 | 188.23 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 61 | 188.39 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 70 | 188.60 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 2 | 9 |
| 84 | 188.72 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 7 | 4 |
| 120 | 188.89 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 167 | 189.12 | atmosphere | 1005.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 339 | 190.03 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 348 | 190.06 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 14 |
| 502 | 190.69 | atmosphere | 1005.0 | 14400 | > th | dose dependent | no | NA | NA |
| 514 | 190.74 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 520 | 190.77 | atmosphere | 1010.0 | 14400 | < th | dose independent | sin | 2 | NA |
| 529 | 190.78 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 530 | 190.78 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 591 | 190.94 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 7 | 20 |
| 618 | 191.00 | radiation | 30.0 | 43200 | < th | dose independent | sin | 22 | NA |
| 632 | 191.04 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 633 | 191.04 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 634 | 191.05 | radiation | 10.0 | 43200 | < th | dose independent | sin | 21 | NA |
| 669 | 191.11 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 673 | 191.13 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 12 |
| 699 | 191.18 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 11 | 21 |
| 707 | 191.20 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 745 | 191.24 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 922 | 191.51 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 989 | 191.60 | radiation | 30.0 | 43200 | < th | dose independent | no | NA | NA |