Os04g0185500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein containing C-terminal RING-finger.
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Os04g0185500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein containing C-terminal RING-finger.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.13 | 0.157 | 12.6 | 0.543 | 0.244 | -0.425 | -0.241 | -1.54 | 0.219 | 3.84 | 25.3 | 3062 | -- | -- |
| 13.1 | 0.169 | 12.6 | 0.243 | 0.258 | -0.307 | -0.221 | -- | 0.161 | 4.14 | 60.68 | 2052 | -- | -- |
| 11.25 | 0.156 | 12.6 | 0.536 | 0.245 | -0.455 | -- | -1.57 | 0.215 | 3.76 | 24.5 | 3136 | -- | -- |
| 13.24 | 0.169 | 12.6 | 0.239 | 0.258 | -0.317 | -- | -- | 0.157 | 4.15 | 47.2 | 2035 | -- | -- |
| 14.34 | 0.176 | 12.6 | 0.542 | -- | -0.42 | -- | -1.39 | 0.216 | -- | 26.48 | 2724 | -- | -- |
| 14.86 | 0.181 | 12.6 | 0.344 | 0.254 | -- | -0.216 | -- | 0.216 | 3.78 | -- | -- | -- | -- |
| 14.99 | 0.181 | 12.6 | 0.347 | 0.253 | -- | -- | -- | 0.218 | 3.71 | -- | -- | -- | -- |
| 15.95 | 0.186 | 12.6 | 0.239 | -- | -0.39 | -- | -- | 0.155 | -- | 49.95 | 1190 | -- | -- |
| 14.54 | 0.178 | 12.6 | -- | 0.228 | -0.397 | -- | -- | 0.117 | 4.36 | 43.31 | 2484 | -- | -- |
| 18.52 | 0.201 | 12.6 | 0.358 | -- | -- | -- | -- | 0.224 | -- | -- | -- | -- | -- |
| 18.17 | 0.199 | 12.6 | -- | 0.259 | -- | -- | -- | 0.179 | 3.7 | -- | -- | -- | -- |
| 17.21 | 0.193 | 12.6 | -- | -- | -0.434 | -- | -- | 0.114 | -- | 61.14 | 2620 | -- | -- |
| 21.9 | 0.218 | 12.6 | -- | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.71 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 3 | 10.81 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 5 | 10.82 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 16 | 10.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 17 | 10.88 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 22 | 10.90 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 32 | 10.92 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 37 | 10.93 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 104 | 11.06 | temperature | 25 | 4320 | < th | dose dependent | sin | 16 | NA |
| 125 | 11.09 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 228 | 11.16 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 451 | 11.33 | temperature | 15 | 4320 | > th | dose dependent | sin | 13 | NA |
| 508 | 11.35 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 19 |
| 565 | 11.38 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 609 | 11.39 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 610 | 11.39 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 23 |
| 786 | 11.46 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 929 | 11.49 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 19 |