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Os04g0648800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0132) R2 : 0.808
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.48 (0.0337) R2dC : 0.809 R2C : 0.808
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0156 (0.0278) R2dN8 : 0.000171 R2N8 : -0.00107
σ : 0.249
deviance : 28.3
__
_____
C
peak time of C : 3.98
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.66 0.214 11.2 0.396 1.07 0.548 0.228 -0.513 0.067 4.77 25.11 254 -- --
21.19 0.214 11.3 0.384 1.07 0.551 -0.135 -- 0.064 4.64 29.54 260 -- --
20.74 0.212 11.2 0.393 1.08 0.536 -- -0.396 0.0641 4.74 25.88 247 -- --
21.23 0.215 11.3 0.391 1.09 0.543 -- -- 0.0633 4.64 29.95 259 -- --
23.46 0.226 11.3 0.423 -- 1.48 -- -0.31 0.105 -- 4.647 501 -- --
24.86 0.234 11.3 0.354 1.47 -- -0.192 -- 0.023 3.97 -- -- -- --
24.96 0.234 11.3 0.356 1.47 -- -- -- 0.0241 3.98 -- -- -- --
23.75 0.227 11.3 0.414 -- 1.48 -- -- 0.104 -- 4.82 501 -- --
25.14 0.234 11.3 -- 1.18 0.519 -- -- 0.0186 4.43 50 259 -- --
142.95 0.559 11.3 0.416 -- -- -- -- 0.0633 -- -- -- -- --
28.3 0.249 11.3 -- 1.48 -- -- -- -0.0156 3.98 -- -- -- --
28.1 0.247 11.3 -- -- 1.48 -- -- 0.0587 -- 6.143 496 -- --
147.52 0.567 11.3 -- -- -- -- -- 0.0171 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.35 radiation 30.0 270 < th dose dependent rect. 15 18
2 17.44 temperature 30.0 90 < th dose dependent rect. 17 6
15 18.03 temperature 10.0 270 > th dose dependent rect. 9 17
18 18.07 radiation 20.0 270 < th dose independent rect. 15 18
19 18.09 temperature 30.0 270 < th dose dependent rect. 17 3
29 18.30 radiation 10.0 270 < th dose dependent rect. 4 17
32 18.35 radiation 40.0 270 < th dose dependent rect. 14 7
37 18.45 temperature 15.0 270 > th dose independent rect. 22 17
48 18.54 radiation 20.0 270 < th dose independent rect. 15 6
84 18.77 temperature 30.0 10 < th dose dependent rect. 17 5
95 18.83 radiation 1.0 270 < th dose dependent rect. 16 4
103 18.87 radiation 1.0 270 < th dose independent rect. 15 5
110 18.89 wind 9.0 270 < th dose independent rect. 22 17
125 18.98 atmosphere 995.0 270 > th dose independent rect. 15 7
135 19.01 radiation 1.0 270 > th dose independent rect. 8 9
136 19.01 humidity 50.0 270 > th dose independent rect. 22 17
141 19.02 radiation 10.0 270 < th dose dependent sin 23 NA
152 19.05 temperature 10.0 270 > th dose independent rect. 15 7
157 19.06 radiation 10.0 270 < th dose independent rect. 4 17
163 19.08 wind 9.0 270 < th dose independent rect. 15 7
167 19.10 temperature 15.0 270 > th dose independent rect. 8 9
171 19.11 humidity 90.0 270 < th dose independent rect. 8 9
175 19.12 humidity 50.0 270 > th dose independent rect. 16 16
179 19.14 atmosphere 995.0 270 > th dose independent rect. 22 17
193 19.17 wind 9.0 270 < th dose independent rect. 8 9
197 19.18 temperature 15.0 270 > th dose independent rect. 20 21
201 19.19 precipitation 0.1 270 < th dose independent rect. 22 17
204 19.19 radiation 10.0 270 < th dose dependent rect. 8 12
205 19.19 precipitation 0.1 270 < th dose dependent rect. 22 17
212 19.21 temperature 15.0 270 > th dose independent rect. 11 15
224 19.23 temperature 15.0 270 > th dose independent rect. 20 8
225 19.23 atmosphere 995.0 270 > th dose independent rect. 17 15
228 19.24 temperature 25.0 90 < th dose independent rect. 16 7
231 19.25 temperature 30.0 270 < th dose independent rect. 16 16
243 19.27 precipitation 0.1 270 < th dose independent rect. 8 9
246 19.27 precipitation 0.1 270 < th dose dependent rect. 8 9
256 19.30 wind 1.0 270 > th dose independent rect. 15 7
257 19.30 precipitation 0.1 270 < th dose independent rect. 15 7
258 19.30 wind 9.0 270 < th dose independent rect. 17 15
262 19.30 precipitation 0.1 270 < th dose dependent rect. 15 7
278 19.33 humidity 50.0 270 > th dose independent rect. 15 6
280 19.33 atmosphere 1015.0 270 < th dose independent rect. 8 9
281 19.33 radiation 40.0 270 < th dose independent rect. 2 9
282 19.33 temperature 10.0 270 > th dose independent rect. 17 15
283 19.33 atmosphere 1015.0 270 < th dose independent rect. 22 17
284 19.33 wind 9.0 270 < th dose independent rect. 21 19
288 19.34 atmosphere 995.0 270 > th dose independent rect. 16 5
303 19.36 temperature 15.0 270 > th dose independent rect. 21 6
321 19.38 temperature 10.0 270 > th dose dependent rect. 8 8
325 19.39 radiation 1.0 270 > th dose independent sin 23 NA
327 19.39 atmosphere 1015.0 270 < th dose independent rect. 15 7
370 19.46 wind 9.0 270 < th dose independent rect. 16 5
371 19.46 temperature 10.0 270 > th dose independent rect. 16 5
373 19.46 wind 1.0 270 > th dose independent rect. 8 9
374 19.46 precipitation 0.1 270 < th dose independent rect. 17 15
378 19.46 precipitation 0.1 270 < th dose dependent rect. 17 15
390 19.48 wind 1.0 270 > th dose independent rect. 16 16
396 19.49 wind 9.0 270 < th dose dependent rect. 15 6
403 19.50 radiation 1.0 270 < th dose independent rect. 7 13
406 19.52 wind 1.0 270 > th dose independent rect. 16 5
408 19.52 radiation 1.0 270 < th dose independent rect. 9 11
427 19.55 temperature 30.0 270 < th dose independent rect. 17 3
434 19.56 atmosphere 1015.0 270 < th dose independent rect. 16 5
448 19.57 precipitation 0.1 270 < th dose independent rect. 2 9
451 19.57 precipitation 0.1 270 < th dose independent rect. 21 19
454 19.57 precipitation 0.1 270 < th dose dependent rect. 2 9
456 19.57 precipitation 0.1 270 < th dose dependent rect. 21 19
462 19.58 temperature 30.0 270 < th dose independent rect. 2 9
506 19.63 precipitation 0.1 270 < th dose independent rect. 16 5
510 19.63 precipitation 0.1 270 < th dose dependent rect. 16 5
519 19.64 radiation 1.0 90 < th dose dependent sin 20 NA
537 19.67 radiation 1.0 90 > th dose independent sin 20 NA
541 19.68 radiation 1.0 90 < th dose independent sin 20 NA
543 19.68 humidity 70.0 270 > th dose independent rect. 15 6
545 19.68 precipitation 0.1 270 < th dose independent rect. 11 15
550 19.68 humidity 50.0 270 > th dose dependent rect. 17 3
551 19.68 precipitation 0.1 270 < th dose dependent rect. 11 15
559 19.69 humidity 50.0 270 > th dose dependent rect. 21 6
576 19.71 wind 9.0 270 < th dose independent rect. 11 15
599 19.73 humidity 50.0 90 > th dose dependent rect. 17 6
622 19.75 temperature 10.0 270 > th dose independent rect. 2 9
624 19.75 atmosphere 995.0 270 > th dose independent rect. 2 9
625 19.75 atmosphere 1015.0 270 < th dose independent rect. 2 9
633 19.76 humidity 60.0 270 > th dose independent rect. 17 3
637 19.76 atmosphere 995.0 270 > th dose independent rect. 8 8
658 19.77 humidity 50.0 270 > th dose independent rect. 8 8
666 19.77 humidity 50.0 270 > th dose dependent rect. 15 6
669 19.77 temperature 10.0 270 > th dose dependent rect. 20 20
682 19.79 atmosphere 1000.0 270 > th dose independent rect. 17 3
701 19.80 radiation 1.0 10 < th dose dependent rect. 17 7
705 19.81 wind 9.0 270 < th dose independent rect. 2 9
707 19.81 temperature 30.0 90 < th dose dependent rect. 5 18
744 19.85 humidity 50.0 270 > th dose independent rect. 2 9
748 19.85 wind 9.0 270 < th dose independent rect. 20 21
761 19.86 temperature 10.0 270 > th dose dependent rect. 21 6
763 19.86 radiation 40.0 270 < th dose dependent rect. 3 8
768 19.87 temperature 30.0 270 < th dose independent rect. 3 17
783 19.89 atmosphere 995.0 270 > th dose independent rect. 3 18
801 19.91 wind 1.0 270 > th dose independent rect. 17 3
810 19.92 atmosphere 1010.0 270 < th dose independent rect. 21 6
812 19.92 atmosphere 995.0 270 > th dose independent rect. 4 16
813 19.92 temperature 10.0 270 > th dose dependent rect. 20 8
818 19.93 temperature 10.0 270 > th dose independent rect. 17 3
819 19.93 atmosphere 1015.0 270 < th dose independent rect. 17 3
836 19.93 humidity 50.0 270 > th dose dependent rect. 3 17
839 19.94 wind 9.0 270 < th dose independent rect. 17 3
842 19.94 humidity 60.0 10 > th dose independent rect. 17 7
877 19.97 radiation 1.0 270 < th dose independent sin 23 NA
884 19.97 humidity 50.0 270 > th dose dependent rect. 20 8
887 19.97 temperature 30.0 270 < th dose dependent rect. 3 18
889 19.98 precipitation 0.1 270 < th dose independent rect. 21 6
897 19.98 precipitation 0.1 270 < th dose dependent rect. 21 6
917 20.00 temperature 30.0 270 < th dose independent rect. 21 6
918 20.00 humidity 50.0 270 > th dose independent rect. 21 6
921 20.00 atmosphere 995.0 270 > th dose independent rect. 21 6
922 20.00 radiation 1.0 270 < th dose independent rect. 21 6
931 20.00 temperature 10.0 270 > th dose independent rect. 3 18
934 20.00 radiation 1.0 270 < th dose dependent rect. 21 6
967 20.01 temperature 10.0 270 > th dose independent rect. 4 16
968 20.01 atmosphere 1015.0 270 < th dose independent rect. 4 16
989 20.02 wind 9.0 270 < th dose independent rect. 21 6