BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0203600 Os08g0203600|AK064968
(161 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0203600 Leucine-rich repeat, plant specific containing... 263 3e-71
Os08g0203400 Protein kinase-like domain containing protein 214 2e-56
Os04g0291900 Protein kinase-like domain containing protein 197 3e-51
Os05g0261700 Leucine-rich repeat, plant specific containing... 182 7e-47
Os05g0257100 Leucine-rich repeat, plant specific containing... 181 2e-46
Os08g0203700 Protein kinase-like domain containing protein 177 2e-45
Os04g0616700 Protein kinase-like domain containing protein 159 1e-39
Os08g0202300 Leucine-rich repeat, plant specific containing... 156 7e-39
Os05g0258900 131 2e-31
Os05g0263100 115 2e-26
Os05g0258400 Protein kinase-like domain containing protein 100 5e-22
Os09g0345300 Similar to Receptor-like serine/threonine kinase 76 1e-14
Os01g0917500 Protein kinase-like domain containing protein 69 1e-12
Os02g0232500 Similar to Receptor-like serine/threonine kinase 68 3e-12
Os11g0692100 Similar to Bacterial blight resistance protein 68 3e-12
Os06g0167500 Leucine-rich repeat, plant specific containing... 65 2e-11
Os02g0153700 Protein kinase-like domain containing protein 64 3e-11
Os04g0618700 Protein kinase-like domain containing protein 64 7e-11
>Os08g0203600 Leucine-rich repeat, plant specific containing protein
Length = 161
Score = 263 bits (673), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 137/161 (85%), Positives = 137/161 (85%)
Query: 1 THRAFQGNSFEGPIPESLSNLTKLTTLRIGDIXXXXXXXXXXXXXXXXNILVLRNCRISG 60
THRAFQGNSFEGPIPESLSNLTKLTTLRIGDI NILVLRNCRISG
Sbjct: 1 THRAFQGNSFEGPIPESLSNLTKLTTLRIGDIVSGSSSFAFVSSLTSLNILVLRNCRISG 60
Query: 61 DLGAVDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGISPSLK 120
DLGAVDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGISPSLK
Sbjct: 61 DLGAVDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGISPSLK 120
Query: 121 NLDFSYNQLTGSFPSWATXXXXXXXXVANNFDLGSTNNGYL 161
NLDFSYNQLTGSFPSWAT VANNFDLGSTNNGYL
Sbjct: 121 NLDFSYNQLTGSFPSWATQNNLQLNLVANNFDLGSTNNGYL 161
>Os08g0203400 Protein kinase-like domain containing protein
Length = 1024
Score = 214 bits (546), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/158 (73%), Positives = 119/158 (75%)
Query: 4 AFQGNSFEGPIPESLSNLTKLTTLRIGDIXXXXXXXXXXXXXXXXNILVLRNCRISGDLG 63
AFQGNSFEGPIP SLSNLTKLTTLRIGDI + LVLRNC+ISGDLG
Sbjct: 245 AFQGNSFEGPIPASLSNLTKLTTLRIGDIVNGSSSLAFISSLTSLDTLVLRNCKISGDLG 304
Query: 64 AVDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGISPSLKNLD 123
AVDFSKF L FLDLSFNNISG VP+SILNLQ L LFLGNNSLTG LPDGISPSL NLD
Sbjct: 305 AVDFSKFANLTFLDLSFNNISGNVPKSILNLQKLIFLFLGNNSLTGELPDGISPSLTNLD 364
Query: 124 FSYNQLTGSFPSWATXXXXXXXXVANNFDLGSTNNGYL 161
FSYNQLTGSFPSW T VANNF LGSTN G L
Sbjct: 365 FSYNQLTGSFPSWVTQNNLQLNLVANNFILGSTNIGML 402
>Os04g0291900 Protein kinase-like domain containing protein
Length = 1146
Score = 197 bits (500), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 108/158 (68%), Positives = 116/158 (73%)
Query: 4 AFQGNSFEGPIPESLSNLTKLTTLRIGDIXXXXXXXXXXXXXXXXNILVLRNCRISGDLG 63
AFQGNSFEGPIPESLSNLTKLTTLRIGDI N L+LRNC+I GDLG
Sbjct: 235 AFQGNSFEGPIPESLSNLTKLTTLRIGDIVNGISPLALISNLTSLNTLILRNCKIYGDLG 294
Query: 64 AVDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGISPSLKNLD 123
AVDFS F KL+ LDLSFNNI+GKV QSILNL L LFLGNN+L G LPDGIS SLK +D
Sbjct: 295 AVDFSMFEKLSLLDLSFNNITGKVSQSILNLGNLQFLFLGNNNLAGRLPDGISSSLKAID 354
Query: 124 FSYNQLTGSFPSWATXXXXXXXXVANNFDLGSTNNGYL 161
FSYNQLTGS PSWA+ VANNF LGST+N L
Sbjct: 355 FSYNQLTGSIPSWASQNNLQLNLVANNFLLGSTSNSRL 392
>Os05g0261700 Leucine-rich repeat, plant specific containing protein
Length = 486
Score = 182 bits (463), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 111/158 (70%)
Query: 4 AFQGNSFEGPIPESLSNLTKLTTLRIGDIXXXXXXXXXXXXXXXXNILVLRNCRISGDLG 63
AF GNSFEGP+PESLSNLTKLT L IGDI + L+LRNC+IS DLG
Sbjct: 212 AFHGNSFEGPVPESLSNLTKLTRLWIGDIINGVSPLAFISNMASLSTLILRNCKISSDLG 271
Query: 64 AVDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGISPSLKNLD 123
AV+FS F +L LDLSFNNI+G+VPQSILNL L LFLGNNSLTG LPDGIS SLK +D
Sbjct: 272 AVEFSMFKQLKLLDLSFNNITGEVPQSILNLGNLNSLFLGNNSLTGKLPDGISSSLKVID 331
Query: 124 FSYNQLTGSFPSWATXXXXXXXXVANNFDLGSTNNGYL 161
FSYNQLTGS PSWA VANNF L +T+ L
Sbjct: 332 FSYNQLTGSIPSWARQNNLQLNLVANNFLLDTTSESTL 369
>Os05g0257100 Leucine-rich repeat, plant specific containing protein
Length = 555
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/158 (62%), Positives = 109/158 (68%)
Query: 4 AFQGNSFEGPIPESLSNLTKLTTLRIGDIXXXXXXXXXXXXXXXXNILVLRNCRISGDLG 63
AFQGNSFEGPIP SLS LTKLT LRIGDI + ++LRNCRISG+LG
Sbjct: 243 AFQGNSFEGPIPASLSKLTKLTNLRIGDIVNGSSSLAFISNLTSLSNMILRNCRISGNLG 302
Query: 64 AVDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGISPSLKNLD 123
VDFSKF L +LDLSFNN +G++PQSILNL L LFLGNNSLTG LPD IS SLK LD
Sbjct: 303 LVDFSKFANLTYLDLSFNNFTGQIPQSILNLGSLEFLFLGNNSLTGSLPDPISSSLKTLD 362
Query: 124 FSYNQLTGSFPSWATXXXXXXXXVANNFDLGSTNNGYL 161
FSYNQL+G FPSW VANNF L TN+ L
Sbjct: 363 FSYNQLSGRFPSWVNQNNLQLNLVANNFVLVGTNSSIL 400
>Os08g0203700 Protein kinase-like domain containing protein
Length = 1023
Score = 177 bits (450), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 109/157 (69%)
Query: 5 FQGNSFEGPIPESLSNLTKLTTLRIGDIXXXXXXXXXXXXXXXXNILVLRNCRISGDLGA 64
FQGNSF+GPIP SLSNLT+LT+LRIGDI N+L+LRNC+IS +LG
Sbjct: 245 FQGNSFQGPIPASLSNLTRLTSLRIGDILNGSSSLSFISNLTSLNVLILRNCKISDNLGT 304
Query: 65 VDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGISPSLKNLDF 124
V+FSK L LDLSFNNI+G VPQSILNL L+ LFLGNNSL+G LP SPSL NLDF
Sbjct: 305 VNFSKLAGLTLLDLSFNNITGHVPQSILNLDKLSFLFLGNNSLSGSLPYDKSPSLNNLDF 364
Query: 125 SYNQLTGSFPSWATXXXXXXXXVANNFDLGSTNNGYL 161
SYN L+GSFP W T VAN+F L STNN L
Sbjct: 365 SYNHLSGSFPPWVTGNNLQLNLVANDFILDSTNNSIL 401
>Os04g0616700 Protein kinase-like domain containing protein
Length = 953
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 104/158 (65%), Gaps = 1/158 (0%)
Query: 5 FQGNSFEGPIPESLSNLTKLTTLRIGDIXXXXXXXXX-XXXXXXXNILVLRNCRISGDLG 63
FQGNSF+GP+P +LSNL +LT LRIGDI N L+LRNC +S L
Sbjct: 233 FQGNSFQGPLPANLSNLVQLTNLRIGDIASGSSSSLAFISNMTSLNTLILRNCMVSDSLA 292
Query: 64 AVDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGISPSLKNLD 123
+DFSKF L LDLSFNNI+G+VPQ++LNL L+ LFLGNN+LTG LP SL+NLD
Sbjct: 293 LIDFSKFASLTLLDLSFNNITGQVPQTLLNLNFLSYLFLGNNNLTGSLPSSKIRSLRNLD 352
Query: 124 FSYNQLTGSFPSWATXXXXXXXXVANNFDLGSTNNGYL 161
FSYNQL+G+FP W + VANNF + +NN L
Sbjct: 353 FSYNQLSGNFPFWVSEEDLQLNLVANNFMVNISNNSAL 390
>Os08g0202300 Leucine-rich repeat, plant specific containing protein
Length = 651
Score = 156 bits (394), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 103/162 (63%), Gaps = 1/162 (0%)
Query: 1 THRAFQGNSFEGPIPESLSNLTKLTTLRIGDIXXXXXXXXXXXXXXXXNILVLRNCRISG 60
T QGN+F+GPIP S SNL LT+LRIGD+ +L LRNCRIS
Sbjct: 220 TELRIQGNNFDGPIPTSFSNLVNLTSLRIGDLVSGSSSLAFMSNMTSLIVLTLRNCRISD 279
Query: 61 DLGAVDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGISPSLK 120
+L +VDFSKF L +LDLSFNNI+GKVP +LNL L LFLGNNSL+G LPD SLK
Sbjct: 280 NLASVDFSKFVGLYYLDLSFNNITGKVPSVLLNLNSLIYLFLGNNSLSGSLPDTKGASLK 339
Query: 121 NLDFSYNQLTGSFPSW-ATXXXXXXXXVANNFDLGSTNNGYL 161
LDFSYN+L+G FPSW +T V NNF + S+N L
Sbjct: 340 VLDFSYNELSGKFPSWYSTERHLQVNLVWNNFMIDSSNRSIL 381
>Os05g0258900
Length = 1003
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 84/125 (67%), Gaps = 12/125 (9%)
Query: 4 AFQGNSFEGPIPESLSNLTKLTTL------------RIGDIXXXXXXXXXXXXXXXXNIL 51
AFQGNSFEGPIP+SLSNLTKLT+L RIGDI + L
Sbjct: 290 AFQGNSFEGPIPQSLSNLTKLTSLLVTDFWKTRMSRRIGDIVDGNSSLAFIGNMTSLSEL 349
Query: 52 VLRNCRISGDLGAVDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGL 111
+LRNC+ISGDL A+DFSKF KL LDLSFN I+G+VPQSILNL L LFLGNNSLTG L
Sbjct: 350 LLRNCKISGDLRAIDFSKFEKLILLDLSFNKITGQVPQSILNLGNLQFLFLGNNSLTGML 409
Query: 112 PDGIS 116
PD S
Sbjct: 410 PDDYS 414
>Os05g0263100
Length = 870
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 84/166 (50%), Gaps = 36/166 (21%)
Query: 8 NSFEGPIPESLSNLTKLTTL------------RIGDIXXXXXXXXXXXXXXXXNILVLRN 55
N F G IPE L +T L + RIGDI + ++LRN
Sbjct: 139 NGFNGKIPEYLGTITNLVEIPHSIEMRIYASQRIGDIVNGISPLAFISNMTSLSTIILRN 198
Query: 56 CRISGDLGAVDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGI 115
C+IS DLGA+DFSKF L L FLGNNSLTG LPDGI
Sbjct: 199 CKISSDLGAIDFSKFEHLELL------------------------FLGNNSLTGRLPDGI 234
Query: 116 SPSLKNLDFSYNQLTGSFPSWATXXXXXXXXVANNFDLGSTNNGYL 161
S SLK +DFSYNQLTGSFPSWA+ VANNF L ST++ L
Sbjct: 235 SSSLKAIDFSYNQLTGSFPSWASQNNLQLNLVANNFLLESTSDSTL 280
>Os05g0258400 Protein kinase-like domain containing protein
Length = 797
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Query: 3 RAFQGNSFEGPIPESLSNLTKLTTLRIGDIXXXXXXXXXXXXXXXXNILVLRNCRISGDL 62
+AF N+ GP+P+ L NLT L +L I + + +C SG
Sbjct: 73 KAFPFNALSGPLPKELGNLTNLLSLGISFNNFSGQLPKELGNMTNLQQMYIDSCGFSGPF 132
Query: 63 GAVDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGISPSLKNL 122
+ FSK L L S N+ +GK+P + + L D+FLGNNS TG LPD ISPSLK +
Sbjct: 133 PST-FSKLQNLKILRSSDNDFTGKIPDYLGIMPKLEDMFLGNNSFTGSLPDAISPSLKAI 191
Query: 123 DFSYNQLTGSFPSWAT 138
DFSYNQLTG PSWAT
Sbjct: 192 DFSYNQLTGGLPSWAT 207
>Os09g0345300 Similar to Receptor-like serine/threonine kinase
Length = 706
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Query: 5 FQGNSFEGPIPESLSNLTKLTTLRIGDIXXXXXXXXXXXXXXXXNILVLRNCRISGDLGA 64
+G+ EGPIP S L L LRI D+ ++LRNC I+G + +
Sbjct: 243 IEGSLLEGPIPSEFSKLINLYDLRISDLRGRGSVFPDLRELVSMKTIILRNCSINGSIPS 302
Query: 65 VDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGISPSLKNLDF 124
L LDLSFN ++G++P S N+ + ++L NSLTG +PD I K D
Sbjct: 303 Y-IGNMDNLKHLDLSFNKLTGEIPASFANMGHVDHIYLTGNSLTGSIPDWILKRNKIADI 361
Query: 125 SYNQLT 130
S+N T
Sbjct: 362 SFNNFT 367
>Os01g0917500 Protein kinase-like domain containing protein
Length = 1294
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 8 NSFEGPIPESLSNLTKLTTLRIGDIXXXXXXXXXXXXXXXXNILVLRNCRISGDLGAVDF 67
N GPIPES+ L+ L L I + L LR R+SG + F
Sbjct: 528 NEITGPIPESIGKLSVLQRLHIDNNLLEGPIPQSVGDLRNLTNLSLRGNRLSGIIPLALF 587
Query: 68 SKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGISPSLKN------ 121
+ KLA LDLS+NN++G +P +I +L +L L L +N L+G +P I +N
Sbjct: 588 N-CRKLATLDLSYNNLTGNIPSAISHLTLLDSLILSSNQLSGSIPAEICVGFENEAHPDS 646
Query: 122 --------LDFSYNQLTGSFPS 135
LD SYNQLTG P+
Sbjct: 647 EFLQHHGLLDLSYNQLTGQIPT 668
>Os02g0232500 Similar to Receptor-like serine/threonine kinase
Length = 719
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 5 FQGNSFEGPIPESLSNLTKLTTLRIGDIXXXXXXXXXXXXXXXXNILVLRNCRISGDLGA 64
QG GPIP +S L LT LR+ D+ +VLRNC I G++
Sbjct: 257 MQGTLMSGPIPPEISLLNNLTELRVTDLSGPSMKFPPLQNAQHLTKVVLRNCSIYGEIPP 316
Query: 65 VDFSKFTKLAFLDLSFNNISGKVPQS---ILNLQMLTDLFLGNNSLTGGLPDGI----SP 117
+ L +DLSFN ++G++PQ+ ++ LQ L L+L +N LTG LP + +
Sbjct: 317 Y-LGQMQYLILMDLSFNKLTGQIPQNFDRMVALQ-LQYLYLSDNMLTGDLPGWMLKNKAS 374
Query: 118 SLKNLDFSYNQLTGSFP 134
+ N+D S+N TG+ P
Sbjct: 375 NKVNMDVSFNNFTGNPP 391
>Os11g0692100 Similar to Bacterial blight resistance protein
Length = 1164
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 2 HRAFQGNSFEGPIPESLSNLTKLTTLRIGDIXXXXXXXXXXXXXXXXNILVLRNCRISGD 61
H QGN F G IP+ + NLTKL LR+ + L L +SG
Sbjct: 544 HLFLQGNKFSGSIPKGIGNLTKLEILRLSNNQLSSTLPPSLFRLESLIQLNLSQNFLSGA 603
Query: 62 LGAVDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPD--GISPSL 119
L +D + ++ +DLS N G +P SI LQM+T L L NS+ G +P+ G L
Sbjct: 604 L-PIDIGQLKRINSMDLSRNRFLGSLPDSIGELQMITILNLSTNSIDGSIPNSFGNLTGL 662
Query: 120 KNLDFSYNQLTGSFPSW 136
+ LD S+N+++G+ P +
Sbjct: 663 QTLDLSHNRISGTIPEY 679
>Os06g0167500 Leucine-rich repeat, plant specific containing protein
Length = 680
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Query: 7 GNSFEGPIPESLSNLTKLTTLRIGDIXXXXXXXXXXXXXXXXNILVLRNCRISGDLGAVD 66
G +GPIPE+ S L + L IGD+ + L LRNC +G
Sbjct: 265 GMKLQGPIPENFSKLINIENLMIGDLDTEGYPFNFTGDWVNLSTLSLRNCGFTGKFPNQI 324
Query: 67 FSKFTKLAFLDLSFNNISGKVPQSILNLQM----LTDLFLGNNSLTGGLPDGISPSLKNL 122
KL ++DL NN+SG + +LQ L L++G N+ G LPD + SL L
Sbjct: 325 LKNLNKLTYVDLRSNNLSGSI-----DLQQYDSSLKYLYVGENNFNGSLPDQMPQSLVAL 379
Query: 123 DFSYNQ-LTGSFPS 135
D +YN L G PS
Sbjct: 380 DVTYNPLLRGRLPS 393
>Os02g0153700 Protein kinase-like domain containing protein
Length = 1047
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 7 GNSFEGPIPESLSNLTKLTTLRIGDIXXXXXXXXXXXXXXXXNILVLRNCRISGDLGAVD 66
GN F G IP+S+S L +L L + +I+ L++ SGDLG V+
Sbjct: 284 GNQFIGKIPDSISQLKRLEELHLDSNMMSGELPGTLGSCTNLSIIDLKHNNFSGDLGKVN 343
Query: 67 FSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGISPSLKNLDF 124
FS L LDL FNN +G +P+SI + LT L L N G L GI +LK L F
Sbjct: 344 FSALHNLKTLDLYFNNFTGTIPESIYSCSNLTALRLSGNHFHGELSPGII-NLKYLSF 400
>Os04g0618700 Protein kinase-like domain containing protein
Length = 1183
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 27/133 (20%)
Query: 5 FQGNSFEGPIPESLSNLTKLTTLRIGDIXXXXXXXXXXXXXXXXNILVLRNCRISGDLGA 64
QGN+ G IPE + N+TKL +L++G RN R +G + A
Sbjct: 489 LQGNALSGEIPEEIGNMTKLISLKLG-----------------------RN-RFAGHVPA 524
Query: 65 VDFSKFTKLAFLDLSFNNISGKVPQSILNLQMLTDLFLGNNSLTGGLPDGIS--PSLKNL 122
S + L LDL N + G P + L+ LT L G+N G +PD ++ SL L
Sbjct: 525 -SISNMSSLQLLDLGHNRLDGVFPAEVFELRQLTILGAGSNRFAGPIPDAVANLRSLSFL 583
Query: 123 DFSYNQLTGSFPS 135
D S N L G+ P+
Sbjct: 584 DLSSNMLNGTVPA 596
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.137 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,397,164
Number of extensions: 141607
Number of successful extensions: 7793
Number of sequences better than 1.0e-10: 71
Number of HSP's gapped: 7831
Number of HSP's successfully gapped: 82
Length of query: 161
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 68
Effective length of database: 12,179,899
Effective search space: 828233132
Effective search space used: 828233132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)