Os09g0345300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Receptor-like serine/threonine kinase.
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Os09g0345300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Receptor-like serine/threonine kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.46 | 0.628 | 8.11 | -2.54 | 1.14 | 1.7 | -0.455 | -0.919 | 0.239 | 5.72 | 19.41 | 1797 | -- | -- |
| 179.5 | 0.624 | 8.08 | -2.42 | 1.14 | 1.99 | -0.458 | -- | 0.275 | 5.72 | 19.12 | 1803 | -- | -- |
| 178.96 | 0.623 | 8.11 | -2.54 | 1.13 | 1.71 | -- | -0.901 | 0.241 | 5.68 | 19.42 | 1793 | -- | -- |
| 180.01 | 0.625 | 8.08 | -2.42 | 1.13 | 1.99 | -- | -- | 0.277 | 5.69 | 19.12 | 1803 | -- | -- |
| 243.27 | 0.726 | 8.12 | -2.47 | -- | 1.8 | -- | -0.973 | 0.286 | -- | 19.1 | 1555 | -- | -- |
| 233.33 | 0.716 | 8.01 | -1.69 | 1.12 | -- | -0.53 | -- | 0.597 | 5.7 | -- | -- | -- | -- |
| 234.01 | 0.716 | 8.01 | -1.69 | 1.12 | -- | -- | -- | 0.599 | 5.64 | -- | -- | -- | -- |
| 244.4 | 0.728 | 8.1 | -2.39 | -- | 2.06 | -- | -- | 0.287 | -- | 19 | 1544 | -- | -- |
| 303.3 | 0.811 | 7.99 | -- | 1.05 | 1.51 | -- | -- | 0.727 | 5.38 | 17.7 | 1710 | -- | -- |
| 298.84 | 0.808 | 8.03 | -1.66 | -- | -- | -- | -- | 0.626 | -- | -- | -- | -- | -- |
| 309.5 | 0.823 | 7.97 | -- | 1.09 | -- | -- | -- | 0.788 | 5.71 | -- | -- | -- | -- |
| 360.96 | 0.885 | 8 | -- | -- | 1.22 | -- | -- | 0.74 | -- | 17.71 | 1590 | -- | -- |
| 371.24 | 0.899 | 7.98 | -- | -- | -- | -- | -- | 0.81 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 175.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 2 | 177.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 7 | 180.36 | humidity | 50 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 10 | 180.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 15 |
| 11 | 180.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 12 | 181.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 13 |
| 13 | 181.04 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 14 | 181.04 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 15 | 181.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 35 | 181.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 15 |
| 39 | 181.22 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 126 | 181.90 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 174 | 182.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 187 | 182.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 9 |
| 257 | 183.04 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 270 | 183.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 272 | 183.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 20 |
| 379 | 183.84 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 404 | 183.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 425 | 184.11 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 429 | 184.13 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 431 | 184.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 436 | 184.23 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 483 | 184.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 498 | 184.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 529 | 185.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 549 | 185.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 570 | 185.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 597 | 185.73 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 599 | 185.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 741 | 187.34 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 768 | 187.60 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 798 | 187.97 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 841 | 188.60 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 868 | 188.88 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 873 | 188.91 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 879 | 188.96 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 10 |
| 924 | 189.32 | radiation | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 963 | 189.54 | temperature | 20 | 1440 | < th | dose dependent | sin | 9 | NA |
| 970 | 189.58 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 6 |
| 992 | 189.78 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 2 |