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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0203400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.04 (0.1) R2 : 0.573
β1 : -5.23 (0.396) R2dD : 0.207 R2D : 0.0484
β2 : 1.18 (0.276) R2dC : 0.02 R2C : 0.0697
β3 : 4.51 (0.264) R2dE : 0.329 R2E : 0.324
β4 : -7.08 (1.19) R2dD*C : 0.034 R2D*C : 0.04
β5 : -9.01 (1.09) R2dD*E : 0.0801 R2D*E : -0.0036
γ1 : -0.48 (0.216) R2dN8 : 0.00663 R2N8 : -0.0252
σ : 1.85
deviance : 1548.16
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_____
C
peak time of C : 5.82
E
wheather : temperature
threshold : 20.5
memory length : 273
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 6.43
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1548.16 1.85 5.04 -5.23 1.18 4.51 -7.08 -9.01 -0.48 5.82 20.5 273 6.43 --
1718.57 1.93 4.97 -4.1 0.859 4.55 -8.71 -- -0.171 4.26 20.2 357 6.78 --
1609.51 1.87 5.12 -5.81 1.17 4.23 -- -11.8 -0.579 0.501 20.5 360 5.59 --
1948.68 2.06 4.85 -4.01 1.81 4.62 -- -- -0.132 6.81 20.31 327 7.67 --
1646.1 1.89 5.11 -5.72 -- 5.04 -- -11.3 -0.602 -- 20.4 322 5.84 --
2171.91 2.18 4.77 -3.41 4.14 -- -6.98 -- 0.43 3.01 -- -- -- --
2327.36 2.26 4.76 -3.26 4.09 -- -- -- 0.475 2.68 -- -- -- --
1971.54 2.07 4.91 -4.31 -- 4.89 -- -- -0.135 -- 20.21 298 5.97 --
2353.14 2.26 4.73 -- 2.11 3.6 -- -- 0.457 5.36 20.52 305 7.67 --
3302.39 2.69 4.74 -3.08 -- -- -- -- 0.578 -- -- -- -- --
2607.24 2.39 4.68 -- 4.03 -- -- -- 0.838 2.67 -- -- -- --
2394.39 2.28 4.8 -- -- 4.61 -- -- 0.291 -- 20.2 285 5.85 --
3553.37 2.78 4.66 -- -- -- -- -- 0.921 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1570.55 temperature 20 270 > th dose independent rect. 19 11
3 1579.51 temperature 20 270 > th dose independent sin 12 NA
6 1588.03 temperature 20 720 > th dose independent rect. 18 7
23 1613.82 temperature 20 90 < th dose independent sin 11 NA
36 1623.63 temperature 20 90 < th dose independent rect. 19 14
43 1627.07 temperature 20 270 < th dose independent rect. 17 14
69 1640.56 temperature 20 90 < th dose independent rect. 19 10
81 1645.56 temperature 20 720 < th dose independent rect. 19 5
82 1645.92 radiation 20 1440 < th dose independent rect. 11 2
83 1646.00 temperature 20 720 < th dose independent rect. 17 8
116 1654.63 temperature 20 720 < th dose independent rect. 21 3
157 1664.05 temperature 20 10 < th dose independent rect. 18 11
165 1665.41 wind 9 43200 > th dose independent rect. 16 1
225 1676.57 wind 7 4320 > th dose independent rect. 18 3
226 1676.57 temperature 20 720 > th dose independent rect. 11 15
243 1679.51 wind 7 4320 < th dose independent rect. 18 3
283 1685.40 wind 5 4320 < th dose independent rect. 24 1
285 1685.64 temperature 20 10 < th dose independent rect. 16 13
298 1687.43 wind 7 4320 > th dose dependent rect. 18 3
309 1689.81 wind 5 4320 > th dose independent rect. 24 1
316 1690.55 wind 9 43200 < th dose independent rect. 16 1
335 1693.14 wind 9 4320 < th dose independent rect. 17 6
362 1697.00 wind 9 4320 < th dose independent rect. 17 10
395 1701.51 wind 9 4320 > th dose independent rect. 17 6
403 1703.07 wind 9 43200 > th dose dependent rect. 15 2
414 1704.80 wind 9 4320 > th dose independent rect. 17 9
416 1705.00 wind 7 4320 > th dose dependent rect. 17 5
425 1706.45 temperature 20 90 < th dose independent rect. 23 6
426 1706.54 radiation 10 1440 > th dose dependent rect. 12 1
475 1711.28 radiation 20 1440 < th dose independent rect. 11 5
481 1711.70 wind 7 4320 > th dose dependent rect. 17 10
490 1712.38 radiation 20 1440 < th dose independent rect. 11 22
494 1712.73 temperature 15 270 > th dose dependent rect. 19 11
507 1714.59 radiation 40 1440 < th dose dependent rect. 11 2
546 1717.95 temperature 20 10 > th dose independent rect. 20 8
559 1719.87 temperature 20 10 < th dose independent rect. 14 15
616 1726.84 temperature 25 10 < th dose dependent sin 11 NA
618 1727.27 temperature 25 270 < th dose dependent sin 13 NA
631 1728.49 temperature 25 720 < th dose dependent rect. 17 7
659 1730.29 temperature 25 10 < th dose dependent rect. 18 16
683 1732.25 temperature 15 720 > th dose dependent rect. 18 6
687 1732.86 temperature 20 270 > th dose independent rect. 9 22
688 1733.01 radiation 20 1440 < th dose independent rect. 11 13
691 1733.14 radiation 20 1440 < th dose independent rect. 11 8
694 1733.20 radiation 20 1440 < th dose independent rect. 11 11
700 1733.50 radiation 20 1440 < th dose independent rect. 11 18
701 1733.61 radiation 20 1440 < th dose independent rect. 11 16
712 1734.30 wind 9 4320 > th dose dependent rect. 17 1
718 1734.65 wind 3 4320 > th dose dependent rect. 24 1
745 1737.40 humidity 90 14400 > th dose independent rect. 22 3
746 1737.40 radiation 10 1440 < th dose independent rect. 13 5
770 1738.66 radiation 10 1440 < th dose independent rect. 13 11
775 1738.93 radiation 10 1440 < th dose independent rect. 13 9
781 1739.41 radiation 10 1440 < th dose independent rect. 13 14
786 1739.71 temperature 25 10 < th dose dependent rect. 16 18
814 1741.96 temperature 25 270 < th dose dependent rect. 17 10
817 1742.32 temperature 25 90 < th dose dependent rect. 17 12
822 1742.58 radiation 10 1440 < th dose independent sin 18 NA
863 1744.78 temperature 10 270 > th dose dependent sin 12 NA
880 1745.34 radiation 10 4320 > th dose dependent rect. 17 15
893 1745.90 radiation 20 43200 < th dose dependent rect. 24 5
932 1748.54 radiation 20 43200 < th dose dependent rect. 3 2
947 1749.86 radiation 10 4320 > th dose dependent rect. 6 2
979 1750.94 radiation 20 1440 < th dose independent rect. 2 14
985 1751.02 radiation 20 1440 < th dose independent rect. 4 12
988 1751.08 radiation 20 1440 < th dose independent rect. 6 10
996 1751.21 radiation 20 1440 < th dose independent rect. 21 19
997 1751.32 radiation 20 1440 < th dose independent rect. 17 23
999 1751.37 radiation 20 1440 < th dose independent rect. 23 17