Os08g0202300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
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Os08g0202300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, plant specific containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.94 | 0.538 | 9.04 | -0.348 | 2.18 | 1.29 | -0.492 | -0.96 | 0.854 | 2.85 | 19.98 | 1209 | -- | -- |
| 132.24 | 0.536 | 9.04 | -0.332 | 2.19 | 1.33 | -0.357 | -- | 0.856 | 2.77 | 19.69 | 1175 | -- | -- |
| 131.54 | 0.534 | 9.04 | -0.333 | 2.18 | 1.3 | -- | -0.74 | 0.867 | 2.8 | 19.7 | 1185 | -- | -- |
| 132.68 | 0.536 | 9.04 | -0.333 | 2.17 | 1.29 | -- | -- | 0.852 | 2.77 | 19.7 | 1175 | -- | -- |
| 157.43 | 0.584 | 9.08 | -0.222 | -- | 2.08 | -- | 0.511 | 0.744 | -- | 5.026 | 464 | -- | -- |
| 181.66 | 0.632 | 9.09 | -0.505 | 2.06 | -- | -0.478 | -- | 0.585 | 3.53 | -- | -- | -- | -- |
| 182.36 | 0.632 | 9.09 | -0.496 | 2.06 | -- | -- | -- | 0.588 | 3.53 | -- | -- | -- | -- |
| 151.48 | 0.573 | 9.09 | -0.536 | -- | 2.16 | -- | -- | 0.68 | -- | 5.25 | 456 | -- | -- |
| 135.02 | 0.541 | 9.06 | -- | 2.11 | 1.49 | -- | -- | 0.893 | 2.18 | 14.07 | 1088 | -- | -- |
| 418.8 | 0.956 | 9.09 | -0.41 | -- | -- | -- | -- | 0.642 | -- | -- | -- | -- | -- |
| 188.86 | 0.643 | 9.08 | -- | 2.05 | -- | -- | -- | 0.643 | 3.53 | -- | -- | -- | -- |
| 158.46 | 0.586 | 9.07 | -- | -- | 2.11 | -- | -- | 0.743 | -- | 4.877 | 458 | -- | -- |
| 423.23 | 0.96 | 9.08 | -- | -- | -- | -- | -- | 0.688 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.92 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 2 | 129.17 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 8 |
| 10 | 129.41 | humidity | 70 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 13 | 129.44 | humidity | 70 | 1440 | > th | dose independent | rect. | 20 | 17 |
| 46 | 129.84 | humidity | 80 | 1440 | < th | dose dependent | sin | 5 | NA |
| 70 | 130.56 | humidity | 70 | 1440 | > th | dose independent | sin | 6 | NA |
| 90 | 131.21 | humidity | 50 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 118 | 131.79 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 135 | 132.03 | humidity | 70 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 166 | 132.23 | humidity | 70 | 1440 | < th | dose independent | sin | 6 | NA |
| 183 | 132.52 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 281 | 133.62 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 340 | 134.39 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 351 | 134.68 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 426 | 135.29 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 435 | 135.43 | humidity | 50 | 1440 | > th | dose dependent | sin | 2 | NA |
| 457 | 135.66 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 463 | 135.74 | radiation | 20 | 1440 | < th | dose dependent | rect. | 6 | 12 |
| 470 | 135.78 | radiation | 20 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 489 | 135.84 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 22 |
| 510 | 135.95 | radiation | 20 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 519 | 135.99 | radiation | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 525 | 136.00 | radiation | 20 | 1440 | < th | dose dependent | rect. | 22 | 20 |
| 555 | 136.08 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 559 | 136.09 | radiation | 20 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 633 | 136.36 | radiation | 20 | 1440 | < th | dose independent | rect. | 5 | 18 |
| 678 | 136.42 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 686 | 136.42 | radiation | 20 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 689 | 136.43 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 704 | 136.44 | radiation | 20 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 716 | 136.46 | radiation | 20 | 1440 | < th | dose independent | rect. | 22 | 20 |
| 726 | 136.47 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 22 |
| 761 | 136.56 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 19 |
| 826 | 136.72 | radiation | 20 | 1440 | < th | dose dependent | sin | 0 | NA |
| 838 | 136.75 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 923 | 136.95 | radiation | 20 | 1440 | < th | dose independent | sin | 3 | NA |
| 971 | 137.02 | humidity | 70 | 1440 | > th | dose independent | rect. | 5 | 18 |