Os05g0258400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os05g0258400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 216.69 | 0.692 | 3.57 | 1.87 | 0.836 | 1.46 | 2.15 | 2.6 | 1.08 | 1.79 | 71.02 | 1401 | -- | -- |
| 231.3 | 0.708 | 3.52 | 2.29 | 0.915 | 1.65 | 2.07 | -- | 1.21 | 1.66 | 71 | 1339 | -- | -- |
| 231.51 | 0.709 | 3.58 | 1.75 | 0.665 | 1.51 | -- | 3.44 | 1.06 | 1.98 | 71.83 | 1536 | -- | -- |
| 247.67 | 0.733 | 3.52 | 2.23 | 0.989 | 1.62 | -- | -- | 1.2 | 2.04 | 71.91 | 1305 | -- | -- |
| 247.96 | 0.733 | 3.56 | 1.72 | -- | 1.75 | -- | 3.23 | 1.06 | -- | 74 | 1660 | -- | -- |
| 331.49 | 0.854 | 3.57 | 1.96 | 0.725 | -- | 1.72 | -- | 0.96 | 1.65 | -- | -- | -- | -- |
| 342.74 | 0.867 | 3.58 | 1.9 | 0.737 | -- | -- | -- | 0.948 | 2.12 | -- | -- | -- | -- |
| 265.88 | 0.759 | 3.52 | 2.22 | -- | 1.94 | -- | -- | 1.2 | -- | 71.53 | 1684 | -- | -- |
| 332.09 | 0.849 | 3.59 | -- | 0.988 | 1.68 | -- | -- | 0.967 | 1.86 | 83 | 2610 | -- | -- |
| 375.23 | 0.905 | 3.57 | 1.93 | -- | -- | -- | -- | 0.966 | -- | -- | -- | -- | -- |
| 438.23 | 0.979 | 3.62 | -- | 0.773 | -- | -- | -- | 0.736 | 2.18 | -- | -- | -- | -- |
| 356.91 | 0.88 | 3.57 | -- | -- | 2.81 | -- | -- | 0.943 | -- | 84 | 1746 | -- | -- |
| 473.91 | 1.02 | 3.62 | -- | -- | -- | -- | -- | 0.751 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 204.65 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 2 | 205.50 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 3 | 208.20 | humidity | 70 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 15 | 208.64 | humidity | 60 | 14400 | > th | dose dependent | rect. | 15 | 4 |
| 20 | 208.99 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 9 |
| 29 | 209.64 | humidity | 90 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 41 | 209.86 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 74 | 210.59 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 99 | 211.09 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 100 | 211.09 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 107 | 211.12 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 134 | 211.53 | humidity | 80 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 139 | 211.60 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 199 | 212.84 | humidity | 70 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 223 | 212.94 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 255 | 213.26 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 263 | 213.43 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 294 | 213.96 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 311 | 214.18 | humidity | 80 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 321 | 214.23 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 345 | 214.60 | humidity | 80 | 14400 | > th | dose dependent | sin | 20 | NA |
| 355 | 214.70 | humidity | 80 | 14400 | > th | dose independent | rect. | 14 | 4 |
| 417 | 215.09 | humidity | 60 | 14400 | > th | dose dependent | sin | 19 | NA |
| 426 | 215.21 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 481 | 215.92 | humidity | 60 | 1440 | > th | dose dependent | rect. | 5 | 17 |
| 512 | 216.28 | humidity | 60 | 1440 | > th | dose dependent | rect. | 2 | 19 |
| 546 | 216.45 | humidity | 70 | 14400 | < th | dose independent | sin | 12 | NA |
| 555 | 216.50 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 596 | 216.86 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 614 | 217.01 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 648 | 217.25 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 663 | 217.31 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 669 | 217.34 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 672 | 217.34 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 673 | 217.34 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 757 | 217.79 | humidity | 80 | 14400 | > th | dose independent | sin | 21 | NA |
| 808 | 218.07 | humidity | 50 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 811 | 218.08 | humidity | 90 | 14400 | < th | dose dependent | sin | 18 | NA |
| 883 | 218.25 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 884 | 218.26 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 922 | 218.30 | temperature | 10 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 954 | 218.54 | humidity | 70 | 14400 | > th | dose independent | sin | 12 | NA |
| 955 | 218.54 | humidity | 60 | 1440 | > th | dose dependent | sin | 1 | NA |