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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0203700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.86 (0.0628) R2 : 0.52
β1 : -2.38 (0.41) R2dD : 0.261 R2D : -0.335
β2 : 2.04 (0.11) R2dC : 0.368 R2C : 0.361
β3 : 1.75 (0.214) R2dE : 0.193 R2E : -0.0766
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.1 (1.59) R2dD*E : 0.399 R2D*E : -0.217
γ1 : 0.178 (0.115) R2dN8 : 0.00549 R2N8 : -0.0256
σ : 0.786
deviance : 285.07
__
_____
C
peak time of C : 17.5
E
wheather : temperature
threshold : 26.2
memory length : 4719
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
284.74 0.793 4.84 -2.11 2.06 1.54 0.604 -9.28 0.14 17.5 25.18 4723 -- --
303.01 0.817 4.58 0.145 1.86 1.58 0.245 -- 0.462 18.2 -8.788 7574 -- --
285.07 0.786 4.86 -2.38 2.04 1.75 -- -11.1 0.178 17.5 26.2 4719 -- --
303.16 0.816 4.58 0.141 1.86 1.59 -- -- 0.461 18.3 -8.788 7574 -- --
444.35 0.987 4.59 -0.382 -- 2.47 -- -4.38 0.378 -- 25.21 1908 -- --
326.93 0.848 4.53 0.452 2.12 -- 0.513 -- 0.682 17.5 -- -- -- --
327.58 0.848 4.53 0.45 2.12 -- -- -- 0.685 17.5 -- -- -- --
370.15 0.896 4.56 -0.0645 -- 2.59 -- -- 0.385 -- 24.2 326 -- --
303.63 0.816 4.59 -- 1.84 1.66 -- -- 0.438 18.3 -8.788 7574 -- --
562.07 1.11 4.5 0.38 -- -- -- -- 0.633 -- -- -- -- --
332.9 0.853 4.54 -- 2.12 -- -- -- 0.635 17.6 -- -- -- --
370.2 0.896 4.56 -- -- 2.57 -- -- 0.381 -- 24.2 326 -- --
565.88 1.11 4.51 -- -- -- -- -- 0.591 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 281.33 temperature 25 720 > th dose independent rect. 6 8
7 282.54 temperature 25 720 < th dose independent rect. 8 5
8 282.67 temperature 20 720 > th dose dependent rect. 6 3
9 282.71 temperature 20 720 > th dose dependent sin 4 NA
11 282.92 temperature 25 720 > th dose independent sin 3 NA
14 283.02 temperature 20 720 > th dose dependent rect. 5 9
24 283.46 temperature 20 720 > th dose dependent rect. 1 15
28 283.67 temperature 20 720 > th dose dependent rect. 4 12
52 284.45 temperature 25 270 < th dose independent rect. 7 22
65 284.65 temperature 25 270 > th dose independent rect. 24 21
70 284.75 temperature 30 720 < th dose dependent rect. 8 5
74 284.84 temperature 25 720 < th dose independent sin 2 NA
75 284.89 temperature 25 270 < th dose independent rect. 8 12
109 285.45 temperature 25 90 < th dose independent rect. 10 10
132 285.84 temperature 20 270 > th dose dependent rect. 6 16
138 285.94 temperature 20 270 > th dose dependent rect. 5 19
145 286.03 temperature 30 720 < th dose dependent rect. 3 13
161 286.17 temperature 30 720 < th dose dependent rect. 4 11
169 286.26 temperature 30 10 < th dose dependent rect. 10 11
172 286.29 temperature 30 720 < th dose dependent sin 2 NA
194 286.53 temperature 25 270 < th dose independent rect. 22 23
198 286.58 temperature 25 270 > th dose independent sin 22 NA
209 286.63 temperature 30 270 < th dose dependent rect. 8 12
236 286.99 temperature 30 720 < th dose dependent rect. 8 3
258 287.20 temperature 25 270 < th dose independent sin 22 NA
320 287.89 temperature 25 720 < th dose dependent rect. 8 1
392 288.59 temperature 25 4320 > th dose dependent rect. 12 2
472 289.16 temperature 30 270 < th dose dependent sin 22 NA
480 289.22 temperature 20 4320 > th dose independent rect. 5 1
508 289.39 temperature 20 4320 < th dose independent rect. 2 4
516 289.44 temperature 25 4320 > th dose dependent rect. 11 8
517 289.44 temperature 25 4320 > th dose dependent rect. 24 15
518 289.44 temperature 25 4320 > th dose dependent rect. 1 18
520 289.45 temperature 20 4320 > th dose independent rect. 2 4
545 289.51 temperature 25 4320 > th dose dependent rect. 9 10
551 289.52 temperature 25 4320 > th dose dependent sin 0 NA
564 289.53 temperature 25 4320 > th dose dependent rect. 6 13
581 289.57 temperature 25 4320 > th dose dependent rect. 6 10
634 289.69 temperature 20 4320 > th dose independent rect. 3 1
672 289.78 temperature 20 14400 < th dose independent rect. 5 1
677 289.80 temperature 20 4320 < th dose independent rect. 3 1
696 289.84 temperature 25 270 > th dose independent rect. 4 23
703 289.85 temperature 25 4320 > th dose dependent rect. 11 23
711 289.87 temperature 25 4320 > th dose dependent rect. 18 22
732 289.91 temperature 25 4320 > th dose dependent rect. 8 23
745 289.93 temperature 25 4320 > th dose dependent rect. 8 20
757 289.94 temperature 25 4320 > th dose dependent rect. 6 23
764 289.95 temperature 25 4320 > th dose dependent rect. 11 20
768 289.96 temperature 25 4320 > th dose dependent no NA NA
785 289.97 temperature 25 4320 > th dose dependent rect. 11 17
806 289.99 wind 1 43200 < th dose dependent rect. 24 1
896 290.18 temperature 25 270 > th dose independent no NA NA
906 290.20 temperature 20 4320 > th dose independent rect. 21 9
930 290.27 temperature 20 270 > th dose dependent sin 22 NA
952 290.37 humidity 70 43200 > th dose independent rect. 19 3
955 290.37 temperature 20 4320 < th dose independent rect. 21 9
981 290.48 temperature 25 1440 < th dose dependent rect. 2 3
992 290.50 temperature 30 10 < th dose dependent sin 19 NA
996 290.52 temperature 25 720 > th dose independent rect. 6 3