Os04g0618700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os04g0618700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 593.62 | 1.14 | 8.09 | -1.12 | 0.902 | 2.45 | 1.88 | -0.807 | -0.359 | 1.38 | 18.18 | 120 | -- | -- |
| 595.44 | 1.14 | 8.07 | -1.04 | 0.877 | 2.45 | 1.42 | -- | -0.325 | 1.02 | 18.17 | 122 | -- | -- |
| 596.85 | 1.14 | 8.09 | -1.2 | 0.926 | 2.39 | -- | 0.605 | -0.38 | 1.21 | 17.76 | 122 | -- | -- |
| 599.16 | 1.14 | 8.09 | -1.17 | 0.892 | 2.45 | -- | -- | -0.374 | 1.18 | 18.29 | 122 | -- | -- |
| 604.58 | 1.15 | 8.08 | -1.14 | -- | 3.08 | -- | 0.659 | -0.353 | -- | 15.4 | 126 | -- | -- |
| 686.81 | 1.23 | 8.15 | -1.26 | 3.37 | -- | 1.35 | -- | -0.51 | 1.05 | -- | -- | -- | -- |
| 694.36 | 1.23 | 8.16 | -1.3 | 3.37 | -- | -- | -- | -0.517 | 1.04 | -- | -- | -- | -- |
| 606.76 | 1.15 | 8.08 | -1.14 | -- | 3.1 | -- | -- | -0.351 | -- | 15.56 | 126 | -- | -- |
| 635.18 | 1.17 | 8.07 | -- | 0.745 | 2.58 | -- | -- | -0.243 | 1.04 | 18.31 | 126 | -- | -- |
| 1401.11 | 1.75 | 8.1 | -1.18 | -- | -- | -- | -- | -0.451 | -- | -- | -- | -- | -- |
| 739.12 | 1.27 | 8.13 | -- | 3.35 | -- | -- | -- | -0.372 | 1.02 | -- | -- | -- | -- |
| 640.82 | 1.18 | 8.05 | -- | -- | 3.13 | -- | -- | -0.221 | -- | 16.14 | 141 | -- | -- |
| 1437.59 | 1.77 | 8.07 | -- | -- | -- | -- | -- | -0.321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 588.26 | radiation | 1.0 | 90 | > th | dose independent | rect. | 7 | 11 |
| 2 | 588.86 | radiation | 10.0 | 90 | < th | dose dependent | sin | 22 | NA |
| 4 | 592.39 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 21 | 21 |
| 5 | 593.13 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 23 | 19 |
| 16 | 597.06 | humidity | 80.0 | 90 | < th | dose independent | rect. | 23 | 18 |
| 18 | 597.37 | humidity | 80.0 | 90 | < th | dose independent | rect. | 21 | 20 |
| 21 | 598.12 | humidity | 80.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 24 | 598.29 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 26 | 598.75 | radiation | 1.0 | 90 | < th | dose independent | sin | 23 | NA |
| 27 | 598.80 | radiation | 1.0 | 90 | > th | dose independent | sin | 23 | NA |
| 30 | 599.05 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 7 | 11 |
| 36 | 599.56 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 39 | 599.92 | radiation | 10.0 | 90 | > th | dose independent | rect. | 8 | 23 |
| 49 | 600.79 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 16 | 23 |
| 57 | 601.40 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 71 | 601.61 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 8 | 23 |
| 75 | 601.73 | radiation | 20.0 | 90 | < th | dose dependent | no | NA | NA |
| 78 | 601.83 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 80 | 601.85 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 90 | 602.65 | humidity | 80.0 | 90 | < th | dose independent | rect. | 5 | 12 |
| 98 | 603.27 | humidity | 80.0 | 90 | < th | dose independent | rect. | 7 | 10 |
| 107 | 603.84 | radiation | 20.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 115 | 604.27 | radiation | 10.0 | 90 | < th | dose independent | rect. | 4 | 19 |
| 124 | 604.98 | radiation | 10.0 | 90 | < th | dose independent | rect. | 5 | 16 |
| 136 | 605.80 | radiation | 10.0 | 90 | > th | dose independent | no | NA | NA |
| 253 | 606.39 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 259 | 606.55 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 291 | 607.72 | radiation | 10.0 | 90 | < th | dose independent | rect. | 11 | 20 |
| 292 | 607.72 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 11 | 9 |
| 293 | 607.74 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 9 | 12 |
| 305 | 608.25 | radiation | 10.0 | 90 | < th | dose independent | rect. | 11 | 23 |
| 323 | 608.96 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 18 |
| 332 | 609.20 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 4 | 17 |
| 335 | 609.38 | radiation | 10.0 | 90 | < th | dose independent | rect. | 8 | 23 |
| 366 | 609.93 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 23 |
| 370 | 610.05 | radiation | 10.0 | 90 | > th | dose independent | rect. | 13 | 23 |
| 392 | 610.75 | humidity | 80.0 | 90 | > th | dose independent | rect. | 3 | 18 |
| 398 | 610.83 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 408 | 611.20 | radiation | 10.0 | 90 | < th | dose independent | rect. | 16 | 23 |
| 420 | 611.52 | wind | 5.0 | 90 | < th | dose independent | rect. | 23 | 18 |
| 428 | 611.65 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 430 | 611.67 | wind | 7.0 | 90 | < th | dose independent | rect. | 7 | 10 |
| 434 | 611.74 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 20 |
| 474 | 612.23 | humidity | 50.0 | 90 | > th | dose independent | rect. | 17 | 14 |
| 503 | 612.78 | radiation | 1.0 | 270 | < th | dose independent | sin | 1 | NA |
| 507 | 612.87 | radiation | 10.0 | 90 | < th | dose independent | rect. | 11 | 12 |
| 553 | 613.67 | radiation | 10.0 | 90 | < th | dose independent | no | NA | NA |
| 574 | 613.93 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 575 | 613.96 | humidity | 80.0 | 270 | > th | dose independent | rect. | 1 | 19 |
| 585 | 614.10 | wind | 5.0 | 270 | < th | dose independent | rect. | 21 | 18 |
| 648 | 614.69 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 689 | 615.07 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 779 | 616.13 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 1 | 22 |
| 826 | 616.58 | radiation | 10.0 | 90 | < th | dose independent | rect. | 9 | 12 |
| 839 | 616.77 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 17 |
| 844 | 616.86 | radiation | 10.0 | 90 | < th | dose independent | rect. | 9 | 14 |
| 853 | 616.98 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 17 | 21 |
| 908 | 617.71 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 950 | 617.99 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 10 |
| 951 | 617.99 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 988 | 618.25 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 23 |