Os05g0257100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0257100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Leucine-rich repeat, plant specific containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.73 | 0.401 | 5.83 | -0.621 | 0.477 | -0.425 | -0.753 | 0.217 | 0.247 | 6.16 | 11.88 | 264 | -- | -- |
| 72.8 | 0.397 | 5.83 | -0.631 | 0.486 | -0.404 | -0.842 | -- | 0.245 | 5.89 | 12.81 | 263 | -- | -- |
| 73.93 | 0.4 | 5.83 | -0.615 | 0.467 | -0.43 | -- | 0.385 | 0.255 | 6.48 | 11.19 | 263 | -- | -- |
| 74.44 | 0.402 | 5.83 | -0.61 | 0.455 | -0.445 | -- | -- | 0.25 | 6.54 | 12.13 | 263 | -- | -- |
| 76 | 0.406 | 5.83 | -0.643 | -- | -0.759 | -- | 0.776 | 0.263 | -- | 2.29 | 558 | -- | -- |
| 76.88 | 0.411 | 5.85 | -0.702 | 0.735 | -- | -0.872 | -- | 0.196 | 4.67 | -- | -- | -- | -- |
| 78.88 | 0.416 | 5.84 | -0.697 | 0.73 | -- | -- | -- | 0.201 | 4.68 | -- | -- | -- | -- |
| 77.06 | 0.409 | 5.84 | -0.688 | -- | -0.829 | -- | -- | 0.266 | -- | 6.061 | 579 | -- | -- |
| 84.16 | 0.427 | 5.81 | -- | 0.394 | -0.613 | -- | -- | 0.337 | 7.92 | 11.24 | 271 | -- | -- |
| 107.14 | 0.484 | 5.85 | -0.669 | -- | -- | -- | -- | 0.22 | -- | -- | -- | -- | -- |
| 91.68 | 0.448 | 5.83 | -- | 0.717 | -- | -- | -- | 0.278 | 4.71 | -- | -- | -- | -- |
| 86.49 | 0.433 | 5.82 | -- | -- | -0.872 | -- | -- | 0.352 | -- | 10.01 | 583 | -- | -- |
| 118.95 | 0.509 | 5.83 | -- | -- | -- | -- | -- | 0.294 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 15 |
| 4 | 68.97 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 8 |
| 5 | 69.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 9 | 69.37 | humidity | 80 | 90 | > th | dose independent | rect. | 12 | 9 |
| 21 | 69.81 | humidity | 80 | 10 | > th | dose independent | rect. | 12 | 9 |
| 70 | 70.55 | humidity | 70 | 90 | > th | dose dependent | rect. | 13 | 8 |
| 77 | 70.64 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 1 |
| 79 | 70.65 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 15 |
| 85 | 70.71 | temperature | 25 | 90 | < th | dose independent | rect. | 6 | 14 |
| 91 | 70.75 | temperature | 25 | 10 | < th | dose independent | rect. | 12 | 8 |
| 94 | 70.76 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 11 |
| 102 | 70.81 | humidity | 70 | 10 | > th | dose dependent | rect. | 12 | 9 |
| 123 | 70.89 | temperature | 30 | 30 | < th | dose dependent | sin | 22 | NA |
| 169 | 71.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 1 |
| 175 | 71.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 10 |
| 181 | 71.21 | temperature | 25 | 10 | > th | dose independent | rect. | 10 | 10 |
| 185 | 71.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 196 | 71.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 204 | 71.36 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 10 |
| 229 | 71.43 | temperature | 25 | 90 | > th | dose independent | rect. | 11 | 8 |
| 251 | 71.52 | temperature | 25 | 10 | < th | dose independent | rect. | 12 | 4 |
| 254 | 71.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 261 | 71.55 | humidity | 60 | 30 | > th | dose dependent | rect. | 6 | 15 |
| 280 | 71.62 | radiation | 20 | 270 | < th | dose dependent | sin | 0 | NA |
| 281 | 71.62 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 5 |
| 307 | 71.68 | temperature | 25 | 270 | < th | dose independent | sin | 23 | NA |
| 343 | 71.75 | humidity | 80 | 10 | > th | dose independent | rect. | 8 | 13 |
| 347 | 71.76 | humidity | 80 | 90 | > th | dose independent | rect. | 6 | 15 |
| 353 | 71.77 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 3 |
| 369 | 71.80 | humidity | 80 | 10 | < th | dose independent | rect. | 10 | 13 |
| 370 | 71.80 | humidity | 80 | 10 | < th | dose independent | rect. | 10 | 20 |
| 381 | 71.81 | radiation | 20 | 270 | < th | dose dependent | rect. | 5 | 14 |
| 397 | 71.85 | humidity | 80 | 30 | < th | dose independent | rect. | 10 | 18 |
| 401 | 71.87 | radiation | 10 | 270 | < th | dose independent | sin | 0 | NA |
| 407 | 71.88 | temperature | 25 | 270 | > th | dose independent | sin | 23 | NA |
| 412 | 71.88 | radiation | 10 | 270 | < th | dose independent | rect. | 5 | 14 |
| 463 | 71.97 | humidity | 80 | 10 | > th | dose independent | sin | 20 | NA |
| 474 | 71.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 9 |
| 500 | 72.04 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 1 |
| 527 | 72.07 | humidity | 80 | 720 | > th | dose dependent | rect. | 11 | 5 |
| 590 | 72.16 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 1 |
| 614 | 72.18 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 5 |
| 615 | 72.18 | radiation | 1 | 270 | < th | dose independent | rect. | 11 | 5 |
| 619 | 72.18 | humidity | 70 | 10 | > th | dose dependent | sin | 21 | NA |
| 625 | 72.19 | humidity | 70 | 270 | > th | dose independent | rect. | 11 | 21 |
| 628 | 72.20 | radiation | 1 | 270 | < th | dose independent | rect. | 15 | 1 |
| 640 | 72.21 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 8 |
| 661 | 72.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 1 |
| 671 | 72.23 | humidity | 80 | 10 | < th | dose independent | rect. | 10 | 10 |
| 680 | 72.24 | humidity | 80 | 10 | < th | dose independent | sin | 19 | NA |
| 719 | 72.27 | radiation | 30 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 774 | 72.33 | radiation | 10 | 270 | < th | dose independent | rect. | 11 | 8 |
| 780 | 72.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 4 |
| 823 | 72.36 | radiation | 40 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 827 | 72.37 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 13 |
| 838 | 72.38 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 14 |
| 862 | 72.40 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 2 |
| 863 | 72.40 | radiation | 1 | 30 | < th | dose independent | rect. | 11 | 5 |
| 876 | 72.41 | radiation | 1 | 10 | < th | dose independent | rect. | 13 | 3 |
| 906 | 72.43 | radiation | 10 | 270 | > th | dose independent | rect. | 8 | 10 |
| 948 | 72.45 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 10 |
| 956 | 72.46 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 6 |
| 989 | 72.48 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 1 |