Os01g0917500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0917500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.96 | 0.37 | 10.4 | 1.28 | 1.15 | -1.4 | 1.5 | -1.92 | -0.0728 | 4.28 | 25 | 4685 | -- | -- |
| 63.88 | 0.372 | 10.5 | 1 | 1.14 | -1.08 | 1.5 | -- | -0.0796 | 4.27 | 34.69 | 4521 | -- | -- |
| 68.2 | 0.385 | 10.4 | 1.27 | 1.16 | -1.39 | -- | -1.92 | -0.0783 | 4.33 | 25.03 | 4702 | -- | -- |
| 69.86 | 0.389 | 10.5 | 0.96 | 1.14 | -1.12 | -- | -- | -0.104 | 4.45 | 36.71 | 5315 | -- | -- |
| 133.77 | 0.539 | 10.4 | 1.39 | -- | -1.36 | -- | -1.93 | -0.0191 | -- | 29.25 | 4049 | -- | -- |
| 84.43 | 0.431 | 10.4 | 1.5 | 1.17 | -- | 1.48 | -- | 0.129 | 4.23 | -- | -- | -- | -- |
| 90.54 | 0.446 | 10.4 | 1.49 | 1.18 | -- | -- | -- | 0.121 | 4.27 | -- | -- | -- | -- |
| 134.88 | 0.541 | 10.5 | 1.05 | -- | -1.21 | -- | -- | -0.0989 | -- | 39.09 | 2675 | -- | -- |
| 69.19 | 0.387 | 10.6 | -- | 1.15 | -1.55 | -- | -- | -0.477 | 4.35 | 38.19 | 36057 | -- | -- |
| 165.27 | 0.601 | 10.4 | 1.53 | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
| 148.7 | 0.57 | 10.5 | -- | 1.21 | -- | -- | -- | -0.0447 | 4.25 | -- | -- | -- | -- |
| 139.6 | 0.55 | 10.6 | -- | -- | -1.58 | -- | -- | -0.492 | -- | 82.2 | 32924 | -- | -- |
| 227.21 | 0.704 | 10.5 | -- | -- | -- | -- | -- | -0.018 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.61 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 11 | 61.44 | temperature | 25 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 12 | 61.56 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 14 | 61.67 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 9 |
| 16 | 61.69 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 17 | 61.69 | temperature | 25 | 4320 | < th | dose dependent | rect. | 2 | 6 |
| 22 | 61.71 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 12 |
| 28 | 61.73 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 31 | 61.74 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 36 | 61.74 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 12 |
| 37 | 61.75 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 77 | 61.81 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 6 |
| 113 | 61.86 | temperature | 30 | 4320 | < th | dose dependent | sin | 10 | NA |
| 125 | 61.88 | temperature | 10 | 4320 | > th | dose dependent | sin | 10 | NA |
| 389 | 62.13 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 3 |
| 467 | 62.21 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 6 |
| 792 | 62.52 | temperature | 20 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 804 | 62.53 | temperature | 20 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 864 | 62.59 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 886 | 62.61 | temperature | 30 | 4320 | < th | dose dependent | no | NA | NA |
| 922 | 62.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 992 | 62.70 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 1 |