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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0167500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat, plant specific containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.07 (0.0167) R2 : 0.668
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.07 (0.0419) R2dC : 0.471 R2C : 0.433
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.557 (0.0352) R2dN8 : 0.235 R2N8 : 0.197
σ : 0.316
deviance : 45.57
__
_____
C
peak time of C : 3.19
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.14 0.266 9.03 -0.283 1.05 0.32 -0.634 3.44 0.576 3.23 0.1826 4775 -- --
35.27 0.277 9.06 -0.212 1.05 0.721 -0.671 -- 0.584 3.28 0.6775 3002 -- --
33.43 0.269 9.03 -0.265 1.05 0.301 -- 3.42 0.578 3.21 0.1869 4766 -- --
36.58 0.282 9.06 -0.218 1.05 0.737 -- -- 0.594 3.23 0.7117 3002 -- --
95.79 0.456 9.02 -0.242 -- 0.268 -- 3.8 0.602 -- 0.2274 4839 -- --
44.68 0.313 9.07 -0.0248 1.07 -- -0.52 -- 0.552 3.21 -- -- -- --
45.56 0.316 9.07 -0.0144 1.07 -- -- -- 0.555 3.19 -- -- -- --
99.23 0.464 9.06 -0.183 -- 0.816 -- -- 0.624 -- 0.7341 2621 -- --
37.62 0.286 9.06 -- 1.05 0.653 -- -- 0.61 3.21 0.8909 2933 -- --
110.22 0.491 9.07 0.031 -- -- -- -- 0.583 -- -- -- -- --
45.57 0.316 9.07 -- 1.07 -- -- -- 0.557 3.19 -- -- -- --
100.01 0.466 9.06 -- -- 0.747 -- -- 0.639 -- 0.7581 2581 -- --
110.24 0.49 9.07 -- -- -- -- -- 0.579 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.17 wind 5.0 14400 < th dose dependent rect. 2 2
8 29.91 wind 3.0 43200 > th dose independent rect. 6 1
9 29.93 wind 3.0 43200 < th dose independent rect. 6 1
13 30.00 precipitation 0.1 4320 < th dose independent rect. 13 4
14 30.00 precipitation 0.1 4320 < th dose dependent rect. 13 4
19 30.08 precipitation 0.1 4320 > th dose independent rect. 12 5
23 30.09 precipitation 0.1 4320 > th dose dependent rect. 6 11
25 30.11 precipitation 0.1 4320 > th dose dependent rect. 13 4
30 30.19 precipitation 0.1 4320 > th dose dependent rect. 9 8
31 30.20 wind 3.0 14400 < th dose independent rect. 24 1
33 30.23 precipitation 0.1 4320 > th dose dependent rect. 4 13
34 30.26 precipitation 0.1 4320 > th dose independent rect. 6 11
37 30.27 precipitation 0.1 14400 < th dose independent rect. 7 10
41 30.27 precipitation 0.1 14400 < th dose dependent rect. 7 10
48 30.31 precipitation 0.1 4320 > th dose independent rect. 9 8
49 30.32 precipitation 0.1 4320 < th dose independent rect. 9 8
50 30.32 precipitation 0.1 4320 < th dose dependent rect. 9 8
51 30.34 precipitation 0.1 4320 < th dose independent rect. 4 13
52 30.34 precipitation 0.1 4320 < th dose dependent rect. 4 13
57 30.37 precipitation 0.1 4320 > th dose independent rect. 4 13
65 30.43 wind 3.0 14400 > th dose independent rect. 24 1
66 30.43 wind 1.0 14400 > th dose dependent rect. 24 4
73 30.45 wind 1.0 14400 > th dose dependent rect. 2 2
82 30.54 wind 1.0 43200 > th dose dependent rect. 6 1
90 30.63 wind 3.0 43200 > th dose independent rect. 5 5
100 30.71 wind 3.0 43200 < th dose independent rect. 5 5
101 30.71 wind 5.0 43200 < th dose dependent rect. 6 1
114 30.81 wind 3.0 14400 < th dose independent rect. 3 1
125 30.92 wind 3.0 43200 < th dose independent rect. 20 13
132 30.97 wind 3.0 43200 < th dose independent rect. 1 9
138 31.00 wind 3.0 43200 > th dose independent rect. 20 13
140 31.02 wind 3.0 14400 < th dose independent rect. 24 4
142 31.03 wind 3.0 14400 > th dose independent rect. 3 1
143 31.03 wind 3.0 43200 < th dose independent rect. 23 11
151 31.06 wind 3.0 43200 > th dose independent rect. 1 9
153 31.07 wind 3.0 43200 < th dose independent rect. 1 7
165 31.13 humidity 80.0 43200 > th dose independent rect. 3 4
166 31.13 wind 3.0 43200 > th dose independent rect. 23 11
175 31.16 wind 3.0 43200 < th dose independent sin 8 NA
181 31.17 precipitation 0.1 4320 < th dose independent sin 2 NA
187 31.17 precipitation 0.1 4320 < th dose dependent sin 2 NA
192 31.18 humidity 80.0 43200 > th dose independent rect. 24 7
193 31.18 wind 3.0 14400 < th dose independent rect. 21 8
199 31.19 precipitation 0.1 4320 > th dose independent sin 2 NA
203 31.20 humidity 80.0 43200 > th dose independent rect. 5 1
209 31.22 wind 3.0 43200 > th dose independent sin 9 NA
218 31.23 humidity 80.0 43200 < th dose independent rect. 24 7
237 31.28 humidity 80.0 43200 < th dose independent rect. 3 4
250 31.29 precipitation 0.1 4320 > th dose dependent rect. 1 16
280 31.35 precipitation 0.1 14400 > th dose independent rect. 6 14
281 31.35 precipitation 0.1 14400 < th dose independent rect. 6 14
282 31.35 precipitation 0.1 14400 < th dose dependent rect. 6 14
288 31.36 wind 1.0 14400 > th dose dependent rect. 24 1
348 31.47 precipitation 0.1 14400 > th dose independent rect. 17 1
355 31.48 precipitation 0.1 4320 < th dose independent rect. 1 16
356 31.48 precipitation 0.1 4320 < th dose dependent rect. 1 16
358 31.49 humidity 80.0 43200 > th dose independent rect. 24 1
360 31.49 wind 3.0 14400 > th dose independent rect. 21 8
369 31.50 humidity 80.0 43200 < th dose independent rect. 24 2
375 31.50 wind 1.0 14400 > th dose dependent rect. 21 8
397 31.52 precipitation 0.1 4320 > th dose independent rect. 1 16
398 31.52 wind 3.0 43200 < th dose dependent rect. 1 9
469 31.61 precipitation 0.1 14400 < th dose independent sin 23 NA
473 31.61 precipitation 0.1 14400 < th dose dependent sin 23 NA
476 31.62 precipitation 0.1 14400 > th dose independent sin 23 NA
508 31.66 precipitation 0.1 14400 < th dose independent rect. 17 1
515 31.66 precipitation 0.1 14400 < th dose dependent rect. 17 1
592 31.78 precipitation 0.1 4320 < th dose independent rect. 1 19
593 31.78 precipitation 0.1 4320 > th dose dependent sin 3 NA
595 31.78 precipitation 0.1 4320 < th dose dependent rect. 1 19
601 31.80 wind 5.0 43200 < th dose dependent rect. 22 12
604 31.81 precipitation 0.1 4320 > th dose independent rect. 1 19
606 31.81 wind 5.0 43200 < th dose dependent rect. 20 13
612 31.82 wind 3.0 43200 < th dose dependent rect. 3 7
643 31.87 humidity 80.0 14400 > th dose independent rect. 13 5
684 31.93 wind 5.0 43200 < th dose dependent sin 8 NA
708 31.97 humidity 80.0 43200 < th dose dependent rect. 2 1
743 32.03 wind 9.0 14400 < th dose independent rect. 9 2
823 32.14 humidity 80.0 43200 < th dose dependent rect. 1 6
853 32.17 humidity 80.0 43200 < th dose dependent rect. 22 9
908 32.23 humidity 80.0 14400 > th dose independent rect. 16 1
966 32.28 radiation 1.0 1440 < th dose dependent rect. 7 10
972 32.29 wind 9.0 14400 > th dose dependent rect. 10 1
973 32.29 humidity 80.0 14400 > th dose dependent rect. 13 6