Os04g0616700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0616700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein kinase-like domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.29 | 0.446 | 10.6 | -0.119 | 1.32 | -1.73 | -0.378 | 0.824 | 0.693 | 0.238 | 21.31 | 1268 | -- | -- |
| 91.84 | 0.446 | 10.5 | 0.101 | 1.32 | -1.79 | -0.375 | -- | 0.736 | 0.184 | 21.3 | 1273 | -- | -- |
| 90.88 | 0.444 | 10.6 | -0.12 | 1.31 | -1.73 | -- | 0.902 | 0.691 | 0.222 | 21.3 | 1248 | -- | -- |
| 92.7 | 0.448 | 10.5 | 0.0975 | 1.33 | -1.8 | -- | -- | 0.736 | 0.216 | 21.3 | 1274 | -- | -- |
| 184.55 | 0.633 | 10.5 | -0.197 | -- | -1.84 | -- | 1.22 | 0.717 | -- | 21.4 | 1010 | -- | -- |
| 185.21 | 0.638 | 10.4 | 0.804 | 1.45 | -- | -0.634 | -- | 1.23 | 0.353 | -- | -- | -- | -- |
| 186.93 | 0.64 | 10.4 | 0.829 | 1.45 | -- | -- | -- | 1.24 | 0.318 | -- | -- | -- | -- |
| 185.91 | 0.635 | 10.5 | 0.122 | -- | -1.94 | -- | -- | 0.738 | -- | 21.3 | 1004 | -- | -- |
| 92.92 | 0.449 | 10.5 | -- | 1.33 | -1.84 | -- | -- | 0.719 | 0.221 | 21.38 | 1281 | -- | -- |
| 319 | 0.835 | 10.4 | 0.877 | -- | -- | -- | -- | 1.26 | -- | -- | -- | -- | -- |
| 205.04 | 0.67 | 10.4 | -- | 1.46 | -- | -- | -- | 1.15 | 0.348 | -- | -- | -- | -- |
| 185.97 | 0.635 | 10.5 | -- | -- | -2.02 | -- | -- | 0.687 | -- | 21.36 | 1004 | -- | -- |
| 339.29 | 0.86 | 10.4 | -- | -- | -- | -- | -- | 1.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 2 | 89.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 8 | 90.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 15 |
| 13 | 90.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 11 |
| 43 | 91.25 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 53 | 91.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 58 | 91.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 73 | 91.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 75 | 91.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 94 | 92.25 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 110 | 92.41 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 113 | 92.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 9 |
| 115 | 92.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 147 | 92.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 161 | 93.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 172 | 93.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 209 | 93.39 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 373 | 94.94 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 380 | 94.98 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 391 | 95.07 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 396 | 95.11 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 473 | 95.62 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 494 | 95.71 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 526 | 95.91 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 563 | 96.12 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 617 | 96.41 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 681 | 96.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 705 | 96.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 713 | 96.87 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 17 | NA |
| 727 | 96.91 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 764 | 97.04 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 17 | NA |
| 876 | 97.38 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 893 | 97.43 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 935 | 97.52 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 14 | NA |
| 947 | 97.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 954 | 97.57 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 987 | 97.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |