BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0703500 Os06g0703500|AK102136
(475 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0703500 Similar to SBP-domain protein 5 (Fragment) 827 0.0
Os02g0174100 SBP domain containing protein 156 3e-38
Os04g0551500 SBP domain containing protein 130 2e-30
Os09g0507100 Similar to Squamosa-promoter binding-like prot... 129 4e-30
Os08g0531600 Similar to Squamosa-promoter binding-like prot... 127 2e-29
Os04g0656500 Similar to Squamosa-promoter binding-like prot... 123 3e-28
Os08g0509600 Similar to Squamosa-promoter binding-like prot... 121 9e-28
Os03g0833300 Similar to Squamosa-promoter binding-like prot... 120 3e-27
Os01g0292900 Similar to Squamosa-promoter binding-like prot... 114 2e-25
Os06g0659100 Similar to Squamosa-promoter binding protein 1 112 5e-25
Os02g0177300 Similar to Squamosa-promoter binding protein 1 111 1e-24
Os07g0505200 Similar to SBP-domain protein 6 (Fragment) 110 2e-24
Os09g0491532 Similar to Squamosa-promoter binding protein 2 106 3e-23
Os01g0922600 Similar to SBP-domain protein 4 103 2e-22
Os05g0408200 SBP domain containing protein 94 2e-19
Os02g0139400 Similar to Squamosa-promoter binding-like prot... 79 1e-14
Os11g0496700 78 2e-14
Os06g0663500 SBP domain containing protein 73 4e-13
>Os06g0703500 Similar to SBP-domain protein 5 (Fragment)
Length = 475
Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/475 (85%), Positives = 408/475 (85%)
Query: 1 MASFGMNWNQKSPVFWDWENPAPFGPNTMENPKSIPHPEPRGVVVAAANHXXXXXXXXXX 60
MASFGMNWNQKSPVFWDWENPAPFGPNTMENPKSIPHPEPRGVVVAAANH
Sbjct: 1 MASFGMNWNQKSPVFWDWENPAPFGPNTMENPKSIPHPEPRGVVVAAANHGSTNSSGGTF 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXKLGNSLEFRFASVKGHGKNMCKDGEAGRVEDSGTSPA 120
KLGNSLEFRFASVKGHGKNMCKDGEAGRVEDSGTSPA
Sbjct: 61 TSSSELANGSSKSSLSASFDSSSKLGNSLEFRFASVKGHGKNMCKDGEAGRVEDSGTSPA 120
Query: 121 VAVSHGEPVIGLKLGKRTYFENVCGGQNVKSSSAASGVTCPSTVVKKMKVSQQSTQSSYC 180
VAVSHGEPVIGLKLGKRTYFENVCGGQNVKSSSAASGVTCPSTVVKKMKVSQQSTQSSYC
Sbjct: 121 VAVSHGEPVIGLKLGKRTYFENVCGGQNVKSSSAASGVTCPSTVVKKMKVSQQSTQSSYC 180
Query: 181 QVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSC 240
QVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSC
Sbjct: 181 QVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSC 240
Query: 241 RRRLSDHNARRRKPQQEAISFGSSRLATMFYDARQQTDIYFGQSPFGQVRSNAISSCDNL 300
RRRLSDHNARRRKPQQEAISFGSSRLATMFYDARQQTDIYFGQSPFGQVRSNAISSCDNL
Sbjct: 241 RRRLSDHNARRRKPQQEAISFGSSRLATMFYDARQQTDIYFGQSPFGQVRSNAISSCDNL 300
Query: 301 GGFKFTEAKLPWMKPMKTIGLEDLNFSTLQMPGNVVSHTVHHHDFDGLIPFKGNTPKVLN 360
GGFKFTEAKLPWMKPMKTIGLEDLNFSTLQMPGNVVSHTVHHHDFDGLIPFKGNTPKVLN
Sbjct: 301 GGFKFTEAKLPWMKPMKTIGLEDLNFSTLQMPGNVVSHTVHHHDFDGLIPFKGNTPKVLN 360
Query: 361 QGVDPACAVVSSNSNGAPXXXXXXXXXXXXXWGPADVQAGSQVHPGGXXXXXXXXXXXXX 420
QGVDPACAVVSSNSNGAP WGPADVQAGSQVHPGG
Sbjct: 361 QGVDPACAVVSSNSNGAPDLRRALSLLSSDSWGPADVQAGSQVHPGGVMPPLAVAAATVT 420
Query: 421 XXXXXXXXMHALHPSTGGGGFWQDGDDPPPLDHASQAQAFMHPGNGSSSGYGHLH 475
MHALHPSTGGGGFWQDGDDPPPLDHASQAQAFMHPGNGSSSGYGHLH
Sbjct: 421 APTNPVSVMHALHPSTGGGGFWQDGDDPPPLDHASQAQAFMHPGNGSSSGYGHLH 475
>Os02g0174100 SBP domain containing protein
Length = 251
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 70/117 (59%), Positives = 90/117 (76%), Gaps = 1/117 (0%)
Query: 180 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKS 239
CQVEGC V+L ++YHRKH+VCEAHSK P+V+V+G ERRFCQQCSRFH L+EFDQKK+S
Sbjct: 68 CQVEGCGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFHALSEFDQKKRS 127
Query: 240 CRRRLSDHNARRRKPQQEAISFGSSR-LATMFYDARQQTDIYFGQSPFGQVRSNAIS 295
CRRRL DHNARRRKPQ + S+ S+R +++ +D +Q + ++P VR AIS
Sbjct: 128 CRRRLYDHNARRRKPQTDVFSYASARPPSSLLFDDNRQISFVWNKAPLSHVRPFAIS 184
>Os04g0551500 SBP domain containing protein
Length = 360
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 100/193 (51%), Gaps = 16/193 (8%)
Query: 132 LKLGKRTYFENVCGGQNVKSSSAASGVTCPSTVVKKMKVSQQSTQS----SYCQVEGCKV 187
LKLGKR F G V S G + K +++ + CQVEGC +
Sbjct: 56 LKLGKRPCFWGGDGAGQVAQGSGGGGGGGGGGSADQGKRKEKAATAVPVVPRCQVEGCDI 115
Query: 188 DLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDH 247
L +EYHR+HKVCE H+KAP+V+V G E+RFCQQCSRFH LAEFD KKSCRRRL+ H
Sbjct: 116 TLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKKSCRRRLAGH 175
Query: 248 NARRRKPQ-QEAISFGSSRLATMFYDARQQTDIYFGQSPFGQVRSNAISSCDNLGGFKFT 306
N RRR+ EA++ GS+ M + G P+G SS L
Sbjct: 176 NERRRRSNASEAMARGSAHPHGMPV-------LGHGFPPYGL----PTSSAGALSLLSSA 224
Query: 307 EAKLPWMKPMKTI 319
A PW+ P I
Sbjct: 225 RATGPWLMPTPDI 237
>Os09g0507100 Similar to Squamosa-promoter binding-like protein 11
Length = 472
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 68/88 (77%)
Query: 176 QSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQ 235
Q C V+GCK DLS R+YHR+HKVCE HSK P V+VSG E RFCQQCSRFH L EFD+
Sbjct: 111 QCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDE 170
Query: 236 KKKSCRRRLSDHNARRRKPQQEAISFGS 263
K+SCR+RL HN RRRKPQ +++S GS
Sbjct: 171 AKRSCRKRLDGHNRRRRKPQADSMSSGS 198
>Os08g0531600 Similar to Squamosa-promoter binding-like protein 3
Length = 455
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 77/118 (65%), Gaps = 10/118 (8%)
Query: 176 QSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQ 235
Q C V+GCK DLS R+YHR+HKVCEAHSK P V+VSG E RFCQQCSRFH L EFD+
Sbjct: 114 QCPSCAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSRFHLLQEFDE 173
Query: 236 KKKSCRRRLSDHNARRRKPQQEAISFGSSRLATMFYDARQQTDIYFGQSPFGQVRSNA 293
K+SCR+RL HN RRRKPQ + ++ S Y A QQ + SPF R A
Sbjct: 174 AKRSCRKRLDGHNRRRRKPQPDPMNSAS-------YLASQQGARF---SPFATPRPEA 221
>Os04g0656500 Similar to Squamosa-promoter binding-like protein 3
Length = 416
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 62/75 (82%), Gaps = 1/75 (1%)
Query: 180 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSG-LERRFCQQCSRFHGLAEFDQKKK 238
CQ EGCK DLSSA+ YHR+HKVCE HSKAP V+ +G L +RFCQQCSRFH L EFD KK
Sbjct: 185 CQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAKK 244
Query: 239 SCRRRLSDHNARRRK 253
SCR+RL+DHN RRRK
Sbjct: 245 SCRKRLADHNRRRRK 259
>Os08g0509600 Similar to Squamosa-promoter binding-like protein 8
Length = 417
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 63/76 (82%)
Query: 180 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKS 239
CQVEGC DLS + Y+ +HKVC HSKAP+V+V+GLE+RFCQQCSRFH L EFDQ K+S
Sbjct: 104 CQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKRS 163
Query: 240 CRRRLSDHNARRRKPQ 255
CRRRL+ HN RRR+PQ
Sbjct: 164 CRRRLAGHNERRRRPQ 179
>Os03g0833300 Similar to Squamosa-promoter binding-like protein 8
Length = 969
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 68/99 (68%)
Query: 166 KKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCS 225
KK++V S CQVEGC DL+ R+YHR+HKVCE H+KA +V +RFCQQCS
Sbjct: 138 KKIRVQGGSPSGPACQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCS 197
Query: 226 RFHGLAEFDQKKKSCRRRLSDHNARRRKPQQEAISFGSS 264
RFH L EFD+ K+SCRRRL+ HN RRRK + E GS+
Sbjct: 198 RFHPLQEFDEGKRSCRRRLAGHNRRRRKTRPEVAVGGSA 236
>Os01g0292900 Similar to Squamosa-promoter binding-like protein 2
Length = 862
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 63/79 (79%)
Query: 180 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKS 239
CQV+GC V+LSSAR+Y+++HKVCE H+K+ V + +E RFCQQCSRFH L EFD+ KKS
Sbjct: 107 CQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRFHFLQEFDEGKKS 166
Query: 240 CRRRLSDHNARRRKPQQEA 258
CR RL+ HN RRRK Q +A
Sbjct: 167 CRSRLAQHNRRRRKVQVQA 185
>Os06g0659100 Similar to Squamosa-promoter binding protein 1
Length = 426
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 72/126 (57%), Gaps = 19/126 (15%)
Query: 130 IGLKLGKRTYFENVCGGQNVKSSSAASGVTCPSTVVKKMKVSQQST-------QSSYCQV 182
IGL LG+RTYF S + +++ Q CQ
Sbjct: 136 IGLNLGRRTYF------------SPGDMLAVDRLLMRSRLGGVFGLGFGGAHHQPPRCQA 183
Query: 183 EGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRR 242
EGCK DLS A+ YHR+HKVCE H+KA V SG ++RFCQQCSRFH L EFD+ K+SCR+
Sbjct: 184 EGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRSCRK 243
Query: 243 RLSDHN 248
RL++HN
Sbjct: 244 RLAEHN 249
>Os02g0177300 Similar to Squamosa-promoter binding protein 1
Length = 458
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 64/75 (85%)
Query: 180 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKS 239
CQ EGCK DLS+A+ YHR+HKVC+ H+KA V+ +G ++RFCQQCSRFH LAEFD+ K+S
Sbjct: 197 CQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLAAGKQQRFCQQCSRFHVLAEFDEAKRS 256
Query: 240 CRRRLSDHNARRRKP 254
CR+RL++HN RRRKP
Sbjct: 257 CRKRLTEHNRRRRKP 271
>Os07g0505200 Similar to SBP-domain protein 6 (Fragment)
Length = 216
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 59/74 (79%)
Query: 180 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKS 239
CQVE C VDLS A Y+R+HKVC+ HSK P V+V+GL +RFCQQCSRFH L EFD K+S
Sbjct: 110 CQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRS 169
Query: 240 CRRRLSDHNARRRK 253
CRRRL+ HN RRRK
Sbjct: 170 CRRRLAGHNERRRK 183
>Os09g0491532 Similar to Squamosa-promoter binding protein 2
Length = 323
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 59/79 (74%)
Query: 194 EYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRK 253
+ H +HKVC H+K P V+V+GLE+RFCQQCSRFH L EFDQ+KKSCRRRL+ HN RRRK
Sbjct: 18 DVHGRHKVCYMHAKEPIVVVAGLEQRFCQQCSRFHQLPEFDQEKKSCRRRLAGHNERRRK 77
Query: 254 PQQEAISFGSSRLATMFYD 272
P +S RLA F++
Sbjct: 78 PTPGPLSSRYGRLAASFHE 96
>Os01g0922600 Similar to SBP-domain protein 4
Length = 311
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 58/72 (80%)
Query: 192 AREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARR 251
R+YHR+HKVCEAHSK V V+G ++RFCQQCSRFH L EFD++K+SCR+RL HN RR
Sbjct: 4 VRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRR 63
Query: 252 RKPQQEAISFGS 263
RKPQ + ++ G+
Sbjct: 64 RKPQPDPLNPGN 75
>Os05g0408200 SBP domain containing protein
Length = 842
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 10/116 (8%)
Query: 180 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKS 239
CQV GC+ D+ + YHR+H+VC + A V++ G+++R+CQQC +FH L +FD+ K+S
Sbjct: 171 CQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRS 230
Query: 240 CRRRLSDHNA-RRRKPQQEAISFGSSRLATMFYDARQQTDIYFGQSPFGQVRSNAI 294
CRR+L HN RRRKP + I + D Q D S G++R I
Sbjct: 231 CRRKLERHNKRRRRKPDSKGI---------LEKDIDDQLDFSADGSGDGELREENI 277
>Os02g0139400 Similar to Squamosa-promoter binding-like protein 2
Length = 72
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/49 (75%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Query: 211 VIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQEAI 259
V+VS FC C RFHGLAEFDQKK+SCRRRL DHNARRRKPQ EAI
Sbjct: 4 VLVSFFSLNFCCFC-RFHGLAEFDQKKRSCRRRLHDHNARRRKPQPEAI 51
>Os11g0496700
Length = 162
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 40/47 (85%)
Query: 180 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSR 226
C V+GC+ DLS R+YHR+HKVCEAH+K P V+V+G E+RFCQQCSR
Sbjct: 116 CSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCSR 162
>Os06g0663500 SBP domain containing protein
Length = 118
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/42 (71%), Positives = 35/42 (83%)
Query: 225 SRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQEAISFGSSRL 266
SRFH +EFDQ+K+SCRRRLSDHNARRRKPQ + +FGS L
Sbjct: 54 SRFHAPSEFDQEKRSCRRRLSDHNARRRKPQTDVFAFGSGTL 95
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,609,497
Number of extensions: 689434
Number of successful extensions: 1814
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 1808
Number of HSP's successfully gapped: 18
Length of query: 475
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 370
Effective length of database: 11,553,331
Effective search space: 4274732470
Effective search space used: 4274732470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)