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Os04g0551500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SBP domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0284) R2 : 0.473
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.951 (0.0723) R2dC : 0.211 R2C : 0.17
β3 : -1.8 (0.128) R2dE : 0.252 R2E : 0.103
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.575 (0.0618) R2dN8 : 0.145 R2N8 : 0.0263
σ : 0.528
deviance : 128.73
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_____
C
peak time of C : 16.3
E
wheather : precipitation
threshold : 0.5
memory length : 5916
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
118.14 0.511 10.3 0.277 0.924 -1.68 0.865 -4.68 -0.519 16.6 0.159 4590 -- --
130.46 0.532 10.2 0.255 0.883 -1.68 0.675 -- -0.445 16.7 0.5 3482 -- --
120.12 0.51 10.3 0.287 0.929 -1.7 -- -4.73 -0.514 16.6 0.1574 4590 -- --
132.46 0.536 10.2 0.243 0.925 -1.74 -- -- -0.448 16.7 0.5033 3473 -- --
166.16 0.6 10.3 0.276 -- -1.7 -- -4.89 -0.537 -- 0.1385 4590 -- --
179.69 0.628 10.2 -0.268 0.94 -- 1.2 -- -0.372 16.5 -- -- -- --
183.54 0.634 10.2 -0.26 0.95 -- -- -- -0.366 16.6 -- -- -- --
177.17 0.62 10.2 0.202 -- -1.81 -- -- -0.491 -- 0.5 2590 -- --
128.73 0.528 10.3 -- 0.951 -1.8 -- -- -0.575 16.3 0.5 5916 -- --
231.58 0.711 10.2 -0.296 -- -- -- -- -0.391 -- -- -- -- --
185.32 0.637 10.2 -- 0.954 -- -- -- -0.337 16.6 -- -- -- --
177.9 0.621 10.2 -- -- -1.75 -- -- -0.497 -- 0.5153 2581 -- --
233.9 0.714 10.2 -- -- -- -- -- -0.358 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 110.88 wind 1.0 43200 < th dose independent rect. 1 1
2 111.29 wind 1.0 43200 > th dose independent rect. 1 1
3 112.47 humidity 80.0 43200 < th dose independent rect. 2 5
7 112.87 humidity 80.0 43200 > th dose independent rect. 2 5
10 113.04 humidity 80.0 43200 > th dose independent rect. 2 3
48 114.12 wind 1.0 43200 > th dose dependent rect. 6 1
51 114.22 wind 3.0 43200 < th dose independent rect. 6 3
53 114.33 wind 3.0 43200 < th dose independent rect. 5 5
54 114.36 wind 3.0 43200 < th dose independent rect. 3 7
55 114.39 wind 3.0 43200 > th dose independent rect. 6 3
59 114.51 wind 3.0 43200 > th dose independent rect. 5 5
65 114.72 wind 3.0 43200 < th dose independent rect. 3 10
68 114.76 humidity 80.0 43200 < th dose dependent rect. 22 10
84 115.17 wind 3.0 43200 < th dose independent rect. 3 4
86 115.28 precipitation 0.1 43200 > th dose dependent rect. 19 2
89 115.40 wind 9.0 43200 < th dose dependent rect. 6 1
90 115.41 wind 3.0 43200 > th dose independent rect. 3 10
93 115.44 precipitation 0.1 4320 > th dose dependent rect. 24 17
101 115.55 wind 3.0 43200 < th dose dependent rect. 3 7
109 115.69 wind 3.0 43200 < th dose independent rect. 6 1
112 115.75 humidity 80.0 43200 < th dose dependent rect. 2 5
115 115.80 wind 3.0 43200 < th dose dependent rect. 3 9
135 116.16 wind 3.0 43200 > th dose independent rect. 3 4
145 116.38 humidity 80.0 43200 < th dose dependent rect. 5 1
157 116.64 precipitation 0.1 14400 > th dose dependent rect. 13 4
171 116.79 precipitation 0.1 4320 > th dose independent rect. 22 22
172 116.81 precipitation 0.1 4320 > th dose dependent sin 3 NA
174 116.82 precipitation 0.1 4320 < th dose independent rect. 22 22
175 116.82 precipitation 0.1 4320 < th dose dependent rect. 22 22
176 116.83 precipitation 0.1 4320 < th dose independent sin 2 NA
179 116.83 precipitation 0.1 4320 < th dose dependent sin 2 NA
186 116.89 precipitation 0.1 4320 > th dose independent sin 2 NA
195 117.01 precipitation 0.1 4320 < th dose independent rect. 1 20
197 117.01 precipitation 0.1 4320 < th dose dependent rect. 1 20
205 117.05 wind 1.0 43200 < th dose dependent rect. 24 4
209 117.13 precipitation 0.1 14400 > th dose dependent rect. 13 1
224 117.43 precipitation 0.1 4320 > th dose independent rect. 24 17
226 117.45 precipitation 0.1 4320 < th dose independent rect. 1 16
227 117.45 precipitation 0.1 4320 < th dose dependent rect. 1 16
231 117.55 precipitation 0.1 14400 > th dose dependent rect. 1 19
241 117.68 precipitation 0.1 14400 > th dose dependent rect. 23 21
246 117.73 precipitation 0.1 4320 < th dose independent rect. 3 14
247 117.73 precipitation 0.1 4320 < th dose dependent rect. 3 14
251 117.81 precipitation 0.1 4320 > th dose independent rect. 3 14
259 117.91 wind 1.0 43200 < th dose dependent rect. 1 1
274 118.10 precipitation 0.1 14400 < th dose independent rect. 13 7
275 118.10 precipitation 0.1 14400 < th dose dependent rect. 13 7
276 118.11 temperature 20.0 14400 < th dose independent rect. 20 1
290 118.17 precipitation 0.1 14400 > th dose independent rect. 13 7
293 118.18 wind 5.0 43200 < th dose dependent rect. 5 8
304 118.29 precipitation 0.1 14400 > th dose independent rect. 13 4
312 118.42 precipitation 0.1 14400 < th dose independent rect. 13 4
313 118.42 precipitation 0.1 14400 < th dose dependent rect. 13 4
315 118.44 wind 3.0 43200 < th dose independent sin 6 NA
316 118.44 wind 5.0 43200 < th dose dependent rect. 6 3
325 118.51 humidity 80.0 43200 < th dose dependent rect. 22 1
326 118.51 humidity 80.0 43200 < th dose dependent rect. 22 3
327 118.52 humidity 80.0 43200 < th dose dependent rect. 22 5
337 118.65 humidity 80.0 43200 < th dose dependent rect. 2 1
342 118.69 precipitation 0.1 4320 > th dose dependent rect. 19 22
343 118.70 humidity 80.0 43200 < th dose dependent rect. 24 1
352 118.82 wind 3.0 43200 > th dose independent sin 6 NA
386 119.06 precipitation 0.1 4320 > th dose dependent rect. 3 11
403 119.17 wind 9.0 43200 < th dose dependent rect. 5 8
414 119.25 precipitation 0.1 14400 > th dose independent rect. 13 1
428 119.36 wind 3.0 43200 < th dose independent rect. 20 14
435 119.46 wind 1.0 43200 > th dose dependent rect. 5 8
438 119.49 precipitation 0.1 14400 < th dose independent rect. 13 1
440 119.49 precipitation 0.1 14400 < th dose dependent rect. 13 1
442 119.50 precipitation 0.1 4320 < th dose independent rect. 13 18
443 119.50 precipitation 0.1 4320 < th dose independent rect. 13 20
445 119.50 precipitation 0.1 4320 < th dose dependent rect. 13 18
446 119.50 precipitation 0.1 4320 < th dose dependent rect. 13 20
456 119.55 precipitation 0.1 4320 > th dose independent rect. 13 20
461 119.57 precipitation 0.1 4320 > th dose independent rect. 13 18
472 119.61 wind 3.0 43200 < th dose dependent rect. 8 1
577 119.97 humidity 80.0 14400 > th dose independent rect. 13 7
580 119.97 precipitation 0.1 4320 < th dose independent rect. 15 23
581 119.97 precipitation 0.1 4320 < th dose dependent rect. 15 23
583 119.98 precipitation 0.1 4320 > th dose independent rect. 15 23
615 120.07 wind 3.0 43200 > th dose independent rect. 20 14
623 120.10 precipitation 0.1 4320 > th dose independent no NA NA
624 120.10 precipitation 0.1 4320 < th dose independent no NA NA
625 120.10 precipitation 0.1 4320 < th dose independent rect. 8 23
626 120.10 precipitation 0.1 4320 < th dose dependent no NA NA
628 120.10 precipitation 0.1 4320 < th dose dependent rect. 8 23
631 120.11 precipitation 0.1 4320 > th dose independent rect. 8 23
635 120.12 humidity 80.0 14400 > th dose independent rect. 10 10
640 120.14 precipitation 0.1 4320 < th dose independent rect. 3 11
641 120.14 humidity 80.0 14400 > th dose independent rect. 8 12
645 120.14 precipitation 0.1 4320 < th dose dependent rect. 3 11
690 120.29 wind 1.0 43200 > th dose dependent rect. 5 5
706 120.36 precipitation 0.1 4320 > th dose independent rect. 3 11
708 120.36 precipitation 0.1 4320 > th dose independent rect. 18 23
729 120.41 precipitation 0.1 4320 < th dose independent rect. 18 23
730 120.41 wind 1.0 43200 > th dose dependent rect. 3 11
731 120.41 precipitation 0.1 4320 < th dose dependent rect. 18 23
735 120.42 wind 9.0 43200 < th dose dependent rect. 3 11
771 120.51 precipitation 0.1 14400 > th dose independent rect. 13 13
777 120.53 wind 9.0 43200 < th dose dependent rect. 5 5
793 120.59 precipitation 0.1 14400 < th dose independent rect. 13 13
795 120.59 precipitation 0.1 14400 < th dose dependent rect. 13 13
802 120.61 precipitation 0.1 4320 > th dose dependent rect. 18 20
809 120.67 precipitation 0.1 14400 > th dose independent sin 18 NA
810 120.67 precipitation 0.1 14400 < th dose independent sin 18 NA
814 120.67 precipitation 0.1 14400 < th dose dependent sin 18 NA
842 120.74 precipitation 0.1 14400 < th dose independent rect. 18 3
846 120.74 precipitation 0.1 14400 < th dose dependent rect. 18 3
851 120.76 wind 5.0 43200 < th dose dependent sin 5 NA
861 120.79 wind 3.0 43200 > th dose independent rect. 20 17
881 120.82 temperature 20.0 14400 > th dose independent rect. 18 1
893 120.86 precipitation 0.1 14400 > th dose independent rect. 18 3
940 121.00 humidity 80.0 14400 < th dose independent rect. 10 10
944 121.01 precipitation 0.1 4320 < th dose independent rect. 15 18
948 121.01 precipitation 0.1 4320 < th dose dependent rect. 15 18
953 121.02 humidity 90.0 14400 > th dose dependent rect. 5 17
963 121.04 precipitation 0.1 4320 > th dose independent rect. 5 23
982 121.08 humidity 80.0 14400 < th dose independent rect. 13 7
986 121.08 precipitation 0.1 4320 > th dose independent rect. 15 18
997 121.10 wind 3.0 14400 < th dose dependent rect. 3 1