BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0551500 Os04g0551500|AK068749
(360 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0551500 SBP domain containing protein 585 e-167
Os08g0509600 Similar to Squamosa-promoter binding-like prot... 127 2e-29
Os06g0703500 Similar to SBP-domain protein 5 (Fragment) 125 5e-29
Os02g0174100 SBP domain containing protein 124 1e-28
Os03g0833300 Similar to Squamosa-promoter binding-like prot... 124 2e-28
Os04g0656500 Similar to Squamosa-promoter binding-like prot... 123 2e-28
Os09g0507100 Similar to Squamosa-promoter binding-like prot... 119 4e-27
Os07g0505200 Similar to SBP-domain protein 6 (Fragment) 119 5e-27
Os08g0531600 Similar to Squamosa-promoter binding-like prot... 116 2e-26
Os06g0659100 Similar to Squamosa-promoter binding protein 1 116 3e-26
Os01g0292900 Similar to Squamosa-promoter binding-like prot... 111 8e-25
Os02g0177300 Similar to Squamosa-promoter binding protein 1 111 9e-25
Os09g0491532 Similar to Squamosa-promoter binding protein 2 100 2e-21
Os01g0922600 Similar to SBP-domain protein 4 100 2e-21
Os05g0408200 SBP domain containing protein 96 4e-20
Os11g0496700 71 2e-12
>Os04g0551500 SBP domain containing protein
Length = 360
Score = 585 bits (1507), Expect = e-167, Method: Compositional matrix adjust.
Identities = 297/360 (82%), Positives = 297/360 (82%)
Query: 1 MEGNGCGGSGATPRGVVGMHWAPVVTSXXXXXXXXXXXXXXXXDVQMQQQGGLTCLKLGK 60
MEGNGCGGSGATPRGVVGMHWAPVVTS DVQMQQQGGLTCLKLGK
Sbjct: 1 MEGNGCGGSGATPRGVVGMHWAPVVTSPPSPQPPFLPPAPCRPDVQMQQQGGLTCLKLGK 60
Query: 61 RPCFWXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKEKAATAVPVVPRCQVEGCDITLQGV 120
RPCFW KRKEKAATAVPVVPRCQVEGCDITLQGV
Sbjct: 61 RPCFWGGDGAGQVAQGSGGGGGGGGGGSADQGKRKEKAATAVPVVPRCQVEGCDITLQGV 120
Query: 121 KEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKKSCRRRLAGHNERRR 180
KEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKKSCRRRLAGHNERRR
Sbjct: 121 KEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKKSCRRRLAGHNERRR 180
Query: 181 RSNASEAMARGSAHPHGMPVLGHGFPPYGLPTXXXXXXXXXXXXRATGPWLMPTPDISAR 240
RSNASEAMARGSAHPHGMPVLGHGFPPYGLPT RATGPWLMPTPDISAR
Sbjct: 181 RSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGALSLLSSARATGPWLMPTPDISAR 240
Query: 241 SSAALDELIAENRAALLSWQFFSDRQPPPAGRPTGRSPGSETAGGWHAHLQARXXXXXXX 300
SSAALDELIAENRAALLSWQFFSDRQPPPAGRPTGRSPGSETAGGWHAHLQAR
Sbjct: 241 SSAALDELIAENRAALLSWQFFSDRQPPPAGRPTGRSPGSETAGGWHAHLQARPPPPGAG 300
Query: 301 XQHENQSGHVTLDLMQATTAAGGSGAPFRPVPARPPKEGGDAGCTSDAWTPSPMEGARVV 360
QHENQSGHVTLDLMQATTAAGGSGAPFRPVPARPPKEGGDAGCTSDAWTPSPMEGARVV
Sbjct: 301 GQHENQSGHVTLDLMQATTAAGGSGAPFRPVPARPPKEGGDAGCTSDAWTPSPMEGARVV 360
>Os08g0509600 Similar to Squamosa-promoter binding-like protein 8
Length = 417
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 63/75 (84%)
Query: 107 RCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKK 166
RCQVEGC L G+K Y+ RHKVC +H+KAPRVVV G EQRFCQQCSRFH+L EFD K+
Sbjct: 103 RCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKR 162
Query: 167 SCRRRLAGHNERRRR 181
SCRRRLAGHNERRRR
Sbjct: 163 SCRRRLAGHNERRRR 177
>Os06g0703500 Similar to SBP-domain protein 5 (Fragment)
Length = 475
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 94 RKEKAATAVPVVPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCS 153
+K K + CQVEGC + L +EYHR+HKVCE H+KAP+V+V G E+RFCQQCS
Sbjct: 166 KKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCS 225
Query: 154 RFHVLAEFDDAKKSCRRRLAGHNERRRRSNASEAMARGSA 193
RFH LAEFD KKSCRRRL+ HN RRR+ EA++ GS+
Sbjct: 226 RFHGLAEFDQKKKSCRRRLSDHNARRRKPQ-QEAISFGSS 264
>Os02g0174100 SBP domain containing protein
Length = 251
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Query: 107 RCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKK 166
RCQVEGC + L GVK+YHR+H+VCE H+K PRVVV G E+RFCQQCSRFH L+EFD K+
Sbjct: 67 RCQVEGCGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFHALSEFDQKKR 126
Query: 167 SCRRRLAGHNERRRRSNASEAMARGSAHP 195
SCRRRL HN RRR+ ++ + SA P
Sbjct: 127 SCRRRLYDHNARRRKPQ-TDVFSYASARP 154
>Os03g0833300 Similar to Squamosa-promoter binding-like protein 8
Length = 969
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 66/89 (74%)
Query: 94 RKEKAATAVPVVPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCS 153
+K + P P CQVEGC L GV++YHRRHKVCE+HAKA VV T QRFCQQCS
Sbjct: 138 KKIRVQGGSPSGPACQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCS 197
Query: 154 RFHVLAEFDDAKKSCRRRLAGHNERRRRS 182
RFH L EFD+ K+SCRRRLAGHN RRR++
Sbjct: 198 RFHPLQEFDEGKRSCRRRLAGHNRRRRKT 226
>Os04g0656500 Similar to Squamosa-promoter binding-like protein 3
Length = 416
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Query: 106 PRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHG-TEQRFCQQCSRFHVLAEFDDA 164
PRCQ EGC L K YHRRHKVCE H+KAP VV G QRFCQQCSRFH+L EFDDA
Sbjct: 183 PRCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDA 242
Query: 165 KKSCRRRLAGHNERRRRSNASEAMARG 191
KKSCR+RLA HN RRR+S S+ G
Sbjct: 243 KKSCRKRLADHNRRRRKSKPSDGEHSG 269
>Os09g0507100 Similar to Squamosa-promoter binding-like protein 11
Length = 472
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
Query: 106 PRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAK 165
P C V+GC L ++YHRRHKVCE H+K P VVV G E RFCQQCSRFH+L EFD+AK
Sbjct: 113 PSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAK 172
Query: 166 KSCRRRLAGHNERRRRSNASEAMARGS 192
+SCR+RL GHN RRR+ A ++M+ GS
Sbjct: 173 RSCRKRLDGHNRRRRKPQA-DSMSSGS 198
>Os07g0505200 Similar to SBP-domain protein 6 (Fragment)
Length = 216
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 69/106 (65%), Gaps = 3/106 (2%)
Query: 108 CQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKKS 167
CQVE C + L Y+RRHKVC+ H+K P V+V G QRFCQQCSRFH L EFDDAK+S
Sbjct: 110 CQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRS 169
Query: 168 CRRRLAGHNERRRRSNASEAMARGSAHPH---GMPVLGHGFPPYGL 210
CRRRLAGHNERRR+S A A H G G G PP+ +
Sbjct: 170 CRRRLAGHNERRRKSAADTAHGENCRHADQDAGRSHQGTGNPPFQI 215
>Os08g0531600 Similar to Squamosa-promoter binding-like protein 3
Length = 455
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 61/84 (72%)
Query: 98 AATAVPVVPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHV 157
AA P C V+GC L ++YHRRHKVCE H+K P VVV G E RFCQQCSRFH+
Sbjct: 108 AAAGQQQCPSCAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSRFHL 167
Query: 158 LAEFDDAKKSCRRRLAGHNERRRR 181
L EFD+AK+SCR+RL GHN RRR+
Sbjct: 168 LQEFDEAKRSCRKRLDGHNRRRRK 191
>Os06g0659100 Similar to Squamosa-promoter binding protein 1
Length = 426
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 55/71 (77%)
Query: 106 PRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAK 165
PRCQ EGC L G K YHRRHKVCE HAKA V G +QRFCQQCSRFHVL EFD+AK
Sbjct: 179 PRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAK 238
Query: 166 KSCRRRLAGHN 176
+SCR+RLA HN
Sbjct: 239 RSCRKRLAEHN 249
>Os01g0292900 Similar to Squamosa-promoter binding-like protein 2
Length = 862
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 60/91 (65%)
Query: 106 PRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAK 165
P CQV+GC + L ++Y++RHKVCEVH K+ V + E RFCQQCSRFH L EFD+ K
Sbjct: 105 PCCQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRFHFLQEFDEGK 164
Query: 166 KSCRRRLAGHNERRRRSNASEAMARGSAHPH 196
KSCR RLA HN RRR+ + S H +
Sbjct: 165 KSCRSRLAQHNRRRRKVQVQAGVDVNSLHEN 195
>Os02g0177300 Similar to Squamosa-promoter binding protein 1
Length = 458
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 60/79 (75%)
Query: 106 PRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAK 165
PRCQ EGC L K YHRRHKVC+ HAKA V+ G +QRFCQQCSRFHVLAEFD+AK
Sbjct: 195 PRCQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLAAGKQQRFCQQCSRFHVLAEFDEAK 254
Query: 166 KSCRRRLAGHNERRRRSNA 184
+SCR+RL HN RRR+ A
Sbjct: 255 RSCRKRLTEHNRRRRKPTA 273
>Os09g0491532 Similar to Squamosa-promoter binding protein 2
Length = 323
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 49/61 (80%)
Query: 121 KEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKKSCRRRLAGHNERRR 180
+ H RHKVC +HAK P VVV G EQRFCQQCSRFH L EFD KKSCRRRLAGHNERRR
Sbjct: 17 DDVHGRHKVCYMHAKEPIVVVAGLEQRFCQQCSRFHQLPEFDQEKKSCRRRLAGHNERRR 76
Query: 181 R 181
+
Sbjct: 77 K 77
>Os01g0922600 Similar to SBP-domain protein 4
Length = 311
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 52/62 (83%)
Query: 120 VKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKKSCRRRLAGHNERR 179
V++YHRRHKVCE H+K V V G +QRFCQQCSRFH+L EFD+ K+SCR+RL GHN+RR
Sbjct: 4 VRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRR 63
Query: 180 RR 181
R+
Sbjct: 64 RK 65
>Os05g0408200 SBP domain containing protein
Length = 842
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 61/86 (70%)
Query: 103 PVVPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFD 162
P +CQV GC+ ++ +K YHRRH+VC A A V++ G ++R+CQQC +FH+L +FD
Sbjct: 166 PAEMKCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFD 225
Query: 163 DAKKSCRRRLAGHNERRRRSNASEAM 188
+ K+SCRR+L HN+RRRR S+ +
Sbjct: 226 EDKRSCRRKLERHNKRRRRKPDSKGI 251
>Os11g0496700
Length = 162
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 35/47 (74%)
Query: 108 CQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSR 154
C V+GC L ++YHRRHKVCE HAK P VVV G EQRFCQQCSR
Sbjct: 116 CSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCSR 162
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,524,032
Number of extensions: 590127
Number of successful extensions: 2455
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 2449
Number of HSP's successfully gapped: 16
Length of query: 360
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 258
Effective length of database: 11,709,973
Effective search space: 3021173034
Effective search space used: 3021173034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)