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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0509600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Squamosa-promoter binding-like protein 8.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.14 (0.0372) R2 : 0.101
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.546 (0.097) R2dC : 0.0627 R2C : 0.048
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.356 (0.0784) R2dN8 : 0.0525 R2N8 : 0.0378
σ : 0.702
deviance : 225.31
__
_____
C
peak time of C : 5.04
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
195.83 0.657 4.14 -0.369 0.534 1.72 0.596 0.841 -0.294 4.47 20.54 580 -- --
196.43 0.653 4.13 -0.298 0.538 1.57 0.675 -- -0.278 4.42 20.6 586 -- --
196.72 0.653 4.14 -0.374 0.534 1.72 -- 0.851 -0.295 4.27 20.63 573 -- --
197.14 0.654 4.13 -0.333 0.538 1.44 -- -- -0.285 4.25 20.8 613 -- --
210.2 0.675 4.16 -0.391 -- 2.25 -- 2.14 -0.286 -- 20.65 411 -- --
213.09 0.684 4.16 -0.644 0.553 -- 0.722 -- -0.424 5.2 -- -- -- --
214.35 0.686 4.16 -0.645 0.557 -- -- -- -0.428 5 -- -- -- --
211.34 0.677 4.13 -0.308 -- 1.43 -- -- -0.251 -- 21.8 459 -- --
199.6 0.658 4.12 -- 0.533 1.64 -- -- -0.234 4.19 20.8 614 -- --
230.67 0.71 4.17 -0.625 -- -- -- -- -0.413 -- -- -- -- --
225.31 0.702 4.14 -- 0.546 -- -- -- -0.356 5.04 -- -- -- --
213.53 0.681 4.12 -- -- 1.61 -- -- -0.203 -- 21.71 459 -- --
240.96 0.725 4.15 -- -- -- -- -- -0.344 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 189.73 wind 9.0 4320 > th dose dependent rect. 17 4
2 189.73 wind 9.0 4320 > th dose dependent rect. 16 14
7 189.87 wind 9.0 4320 > th dose independent rect. 17 12
8 189.89 wind 9.0 4320 > th dose independent rect. 17 4
10 189.99 atmosphere 1005.0 30 > th dose dependent rect. 10 17
14 190.04 atmosphere 995.0 10 > th dose dependent rect. 10 15
19 190.16 wind 9.0 4320 > th dose dependent rect. 17 2
22 190.25 wind 9.0 4320 < th dose independent rect. 16 13
26 190.37 atmosphere 1005.0 10 > th dose dependent rect. 10 15
44 190.66 wind 9.0 4320 < th dose independent rect. 17 4
53 190.82 wind 9.0 4320 < th dose independent rect. 16 17
66 191.09 temperature 20.0 1440 < th dose independent rect. 21 1
67 191.11 temperature 20.0 1440 > th dose independent rect. 20 1
76 191.20 wind 9.0 4320 < th dose independent rect. 17 2
81 191.33 radiation 1.0 14400 < th dose dependent rect. 23 2
117 191.68 radiation 1.0 14400 < th dose dependent rect. 21 5
126 191.76 wind 9.0 4320 < th dose independent rect. 16 9
144 191.93 atmosphere 1005.0 90 > th dose dependent sin 18 NA
155 192.13 wind 1.0 30 > th dose independent rect. 1 9
178 192.51 wind 9.0 4320 > th dose dependent sin 12 NA
187 192.62 temperature 20.0 720 < th dose dependent rect. 7 15
243 193.25 atmosphere 1010.0 270 < th dose independent rect. 11 9
248 193.29 temperature 30.0 90 < th dose independent rect. 9 15
267 193.48 wind 9.0 4320 > th dose independent sin 12 NA
271 193.53 temperature 30.0 270 < th dose dependent rect. 7 17
282 193.71 humidity 50.0 1440 > th dose independent rect. 2 10
300 193.83 radiation 1.0 14400 < th dose dependent rect. 21 7
308 193.93 wind 1.0 30 > th dose independent rect. 10 15
315 193.98 wind 9.0 4320 < th dose independent sin 12 NA
319 194.00 temperature 20.0 720 < th dose dependent rect. 19 8
355 194.24 atmosphere 995.0 14400 > th dose independent rect. 11 2
365 194.29 atmosphere 995.0 270 > th dose dependent rect. 19 16
385 194.41 atmosphere 995.0 10 > th dose independent rect. 10 15
386 194.42 temperature 20.0 1440 < th dose dependent rect. 21 1
403 194.54 radiation 1.0 14400 < th dose dependent rect. 19 7
423 194.68 atmosphere 995.0 14400 > th dose independent rect. 6 8
424 194.69 humidity 50.0 1440 > th dose independent rect. 4 8
430 194.74 wind 9.0 10 < th dose independent rect. 1 9
431 194.74 temperature 10.0 10 > th dose independent rect. 1 9
433 194.74 humidity 50.0 10 > th dose independent rect. 1 9
434 194.74 atmosphere 995.0 10 > th dose independent rect. 1 9
435 194.74 atmosphere 1015.0 10 < th dose independent rect. 1 9
436 194.74 temperature 10.0 10 > th dose independent rect. 10 15
451 194.83 atmosphere 1000.0 14400 < th dose dependent rect. 12 1
452 194.83 atmosphere 995.0 10 > th dose dependent rect. 22 14
466 194.90 wind 9.0 10 < th dose independent rect. 10 15
467 194.90 atmosphere 1005.0 720 > th dose dependent rect. 13 15
469 194.91 atmosphere 995.0 90 > th dose dependent rect. 22 14
470 194.92 precipitation 0.1 10 < th dose independent rect. 1 9
471 194.92 precipitation 0.1 10 < th dose dependent rect. 1 9
475 194.94 atmosphere 1005.0 720 > th dose dependent sin 16 NA
479 194.95 temperature 30.0 270 < th dose independent rect. 7 17
487 194.99 precipitation 0.1 10 < th dose independent rect. 10 15
489 194.99 precipitation 0.1 10 < th dose dependent rect. 10 15
512 195.13 temperature 20.0 720 < th dose dependent sin 13 NA
514 195.13 humidity 90.0 14400 > th dose dependent rect. 4 2
525 195.15 atmosphere 1005.0 270 > th dose dependent rect. 15 20
532 195.18 atmosphere 1000.0 14400 < th dose independent rect. 11 2
533 195.18 atmosphere 1015.0 90 < th dose independent rect. 11 23
542 195.21 humidity 60.0 4320 > th dose independent rect. 11 1
566 195.27 humidity 50.0 1440 > th dose independent rect. 6 6
595 195.32 humidity 80.0 14400 > th dose dependent rect. 2 4
599 195.33 atmosphere 1010.0 270 < th dose independent rect. 22 22
607 195.36 temperature 20.0 720 < th dose dependent rect. 7 20
612 195.38 atmosphere 1015.0 270 < th dose independent rect. 23 9
621 195.40 atmosphere 1015.0 270 < th dose dependent rect. 11 9
632 195.46 atmosphere 1000.0 14400 < th dose independent rect. 5 8
640 195.47 atmosphere 1000.0 14400 < th dose independent rect. 7 6
646 195.48 humidity 60.0 4320 < th dose independent rect. 11 1
653 195.50 atmosphere 1000.0 14400 < th dose independent rect. 5 1
656 195.52 atmosphere 1000.0 14400 > th dose independent rect. 5 1
675 195.56 temperature 30.0 270 < th dose dependent rect. 19 17
688 195.58 temperature 30.0 10 < th dose independent rect. 1 9
712 195.62 temperature 10.0 1440 > th dose independent rect. 2 9
715 195.62 atmosphere 995.0 1440 > th dose independent rect. 2 9
716 195.62 temperature 10.0 1440 > th dose independent rect. 11 15
736 195.64 atmosphere 995.0 14400 < th dose dependent rect. 5 10
752 195.67 atmosphere 1000.0 270 > th dose independent rect. 7 17
799 195.77 temperature 30.0 90 < th dose independent rect. 24 9
904 195.97 temperature 30.0 90 < th dose dependent rect. 10 14
924 196.01 atmosphere 1010.0 270 > th dose independent sin 19 NA
953 196.08 temperature 30.0 90 < th dose independent rect. 22 14
967 196.09 atmosphere 1015.0 270 < th dose dependent rect. 22 22
987 196.13 radiation 1.0 14400 < th dose dependent rect. 19 9
998 196.15 temperature 30.0 270 < th dose independent rect. 20 16