BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0509600 Os08g0509600|AK107191
(417 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0509600 Similar to Squamosa-promoter binding-like prot... 604 e-173
Os09g0491532 Similar to Squamosa-promoter binding protein 2 309 2e-84
Os02g0174100 SBP domain containing protein 127 2e-29
Os04g0551500 SBP domain containing protein 127 2e-29
Os06g0703500 Similar to SBP-domain protein 5 (Fragment) 122 7e-28
Os09g0507100 Similar to Squamosa-promoter binding-like prot... 120 1e-27
Os03g0833300 Similar to Squamosa-promoter binding-like prot... 120 2e-27
Os04g0656500 Similar to Squamosa-promoter binding-like prot... 117 1e-26
Os07g0505200 Similar to SBP-domain protein 6 (Fragment) 114 1e-25
Os06g0659100 Similar to Squamosa-promoter binding protein 1 108 1e-23
Os01g0922600 Similar to SBP-domain protein 4 106 4e-23
Os01g0292900 Similar to Squamosa-promoter binding-like prot... 105 6e-23
Os02g0177300 Similar to Squamosa-promoter binding protein 1 105 8e-23
Os05g0408200 SBP domain containing protein 96 6e-20
Os11g0496700 67 2e-11
>Os08g0509600 Similar to Squamosa-promoter binding-like protein 8
Length = 417
Score = 604 bits (1558), Expect = e-173, Method: Compositional matrix adjust.
Identities = 307/390 (78%), Positives = 307/390 (78%)
Query: 28 DEHRQLHGLKFGKKIYFEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 87
DEHRQLHGLKFGKKIYFED
Sbjct: 28 DEHRQLHGLKFGKKIYFEDAAAAAGGGGTGSGSGSASAAPPSSSSKAAGGGRGGGGKNKG 87
Query: 88 XXXXXXXXXXXXXXXRCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQ 147
RCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQ
Sbjct: 88 KGVAAAAPPPPPPPPRCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQ 147
Query: 148 CSRFHLLPEFDQGKRSCRRRLAGHNERRRRPQTPLASRYGRLAASVGEHRRFRSFTLDFS 207
CSRFHLLPEFDQGKRSCRRRLAGHNERRRRPQTPLASRYGRLAASVGEHRRFRSFTLDFS
Sbjct: 148 CSRFHLLPEFDQGKRSCRRRLAGHNERRRRPQTPLASRYGRLAASVGEHRRFRSFTLDFS 207
Query: 208 YPRVPSSVRNAWPAIQPGDRISGGIQWHRNVAPHGHSSAVAGYGANTYXXXXXXXXXPPV 267
YPRVPSSVRNAWPAIQPGDRISGGIQWHRNVAPHGHSSAVAGYGANTY PPV
Sbjct: 208 YPRVPSSVRNAWPAIQPGDRISGGIQWHRNVAPHGHSSAVAGYGANTYSGQGSSSSGPPV 267
Query: 268 FAGPNLPPGGCLAGVGAATDSSCALSLLSTQPWDXXXXXXXXXXXXXXXXXXTTSFDGNP 327
FAGPNLPPGGCLAGVGAATDSSCALSLLSTQPWD TTSFDGNP
Sbjct: 268 FAGPNLPPGGCLAGVGAATDSSCALSLLSTQPWDTTTHSAAASHNQAAAMSTTTSFDGNP 327
Query: 328 VAPSAMAGSYMAPSPWTGSRGHEGGGRSVAHQLPHEVSLDEVHPGPSHHAHFSGELELAL 387
VAPSAMAGSYMAPSPWTGSRGHEGGGRSVAHQLPHEVSLDEVHPGPSHHAHFSGELELAL
Sbjct: 328 VAPSAMAGSYMAPSPWTGSRGHEGGGRSVAHQLPHEVSLDEVHPGPSHHAHFSGELELAL 387
Query: 388 QGNGPAPAPRIDPGSGSTFDQTSNTMDWSL 417
QGNGPAPAPRIDPGSGSTFDQTSNTMDWSL
Sbjct: 388 QGNGPAPAPRIDPGSGSTFDQTSNTMDWSL 417
>Os09g0491532 Similar to Squamosa-promoter binding protein 2
Length = 323
Score = 309 bits (792), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 182/310 (58%), Positives = 208/310 (67%), Gaps = 14/310 (4%)
Query: 118 NYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRR 177
+ + RHKVC+MH+K P VVVAGLEQRFCQQCSRFH LPEFDQ K+SCRRRLAGHNERRR+
Sbjct: 18 DVHGRHKVCYMHAKEPIVVVAGLEQRFCQQCSRFHQLPEFDQEKKSCRRRLAGHNERRRK 77
Query: 178 PQT-PLASRYGRLAASVGEH-RRFRSFTLDFSYPRVPSSVRNAWPAIQPGDRISGGIQWH 235
P PL+SRYGRLAAS E R RSF +DFSYPRVPSSVR+AWPAIQP DR+SG IQW
Sbjct: 78 PTPGPLSSRYGRLAASFHEEPGRSRSFVVDFSYPRVPSSVRDAWPAIQPSDRMSGSIQWQ 137
Query: 236 RNVAPHGHSSAVAGYGA-NTYXXXXXXXXXPPVFAGP--NLPPGGCLAGVGAATDSSCAL 292
H H SAVAGY + + P+ P L GGCLAGV ATDSSCAL
Sbjct: 138 GGHELHPHRSAVAGYSDHHAFSSHGGSAAGAPMLHHPAFELTSGGCLAGV--ATDSSCAL 195
Query: 293 SLLSTQPWDXXXXXXXXXXXXXXXXXXTTSFDG--NPVAPSAMAGSYMAPSP-W-TGSRG 348
SLLSTQPWD ++F G NPV+PS MA +YMA SP W + SRG
Sbjct: 196 SLLSTQPWD-TTQSTSSHNRSPPMSSTASAFGGGNNPVSPSVMASNYMAASPGWNSSSRG 254
Query: 349 HEGGGRSVAHQLPHEVSLDEVHPGPSHHAHFSGELELALQGNGPAPAPRIDPGSGS-TFD 407
H+ G R+V PH V L+EV PG HH HFSGELELALQG P+ P + GSGS F
Sbjct: 255 HD-GARNVHLPPPHGVVLNEVPPGSVHHGHFSGELELALQGGAPSNRPEAEHGSGSGAFS 313
Query: 408 QTSNTMDWSL 417
++N M+WSL
Sbjct: 314 HSTNAMNWSL 323
>Os02g0174100 SBP domain containing protein
Length = 251
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/82 (70%), Positives = 67/82 (81%)
Query: 103 RCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKR 162
RCQVEGCG +L G+K+Y+ +H+VC HSK PRVVVAG E+RFCQQCSRFH L EFDQ KR
Sbjct: 67 RCQVEGCGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFHALSEFDQKKR 126
Query: 163 SCRRRLAGHNERRRRPQTPLAS 184
SCRRRL HN RRR+PQT + S
Sbjct: 127 SCRRRLYDHNARRRKPQTDVFS 148
>Os04g0551500 SBP domain containing protein
Length = 360
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 63/75 (84%)
Query: 103 RCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKR 162
RCQVEGC L G+K Y+ RHKVC +H+KAPRVVV G EQRFCQQCSRFH+L EFD K+
Sbjct: 107 RCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKK 166
Query: 163 SCRRRLAGHNERRRR 177
SCRRRLAGHNERRRR
Sbjct: 167 SCRRRLAGHNERRRR 181
>Os06g0703500 Similar to SBP-domain protein 5 (Fragment)
Length = 475
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 63/76 (82%)
Query: 104 CQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKRS 163
CQVEGC DLS + Y+ +HKVC HSKAP+V+V+GLE+RFCQQCSRFH L EFDQ K+S
Sbjct: 180 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKS 239
Query: 164 CRRRLAGHNERRRRPQ 179
CRRRL+ HN RRR+PQ
Sbjct: 240 CRRRLSDHNARRRKPQ 255
>Os09g0507100 Similar to Squamosa-promoter binding-like protein 11
Length = 472
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 75/119 (63%), Gaps = 10/119 (8%)
Query: 104 CQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKRS 163
C V+GC ADLS ++Y+ RHKVC HSK P VVV+G E RFCQQCSRFHLL EFD+ KRS
Sbjct: 115 CAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRS 174
Query: 164 CRRRLAGHNERRRRPQTPLASRYGRLAASVGEHRRFRSFTLDFSYPRVPSSVRNAWPAI 222
CR+RL GHN RRR+PQ S + + G RF SFT P +WP I
Sbjct: 175 CRKRLDGHNRRRRKPQADSMSSGSFMTSQQGT--RFASFT--------PPRPEPSWPGI 223
>Os03g0833300 Similar to Squamosa-promoter binding-like protein 8
Length = 969
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 64/80 (80%)
Query: 104 CQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKRS 163
CQVEGC ADL+G+++Y+ RHKVC MH+KA VV QRFCQQCSRFH L EFD+GKRS
Sbjct: 152 CQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCSRFHPLQEFDEGKRS 211
Query: 164 CRRRLAGHNERRRRPQTPLA 183
CRRRLAGHN RRR+ + +A
Sbjct: 212 CRRRLAGHNRRRRKTRPEVA 231
>Os04g0656500 Similar to Squamosa-promoter binding-like protein 3
Length = 416
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 74/117 (63%), Gaps = 8/117 (6%)
Query: 103 RCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAG-LEQRFCQQCSRFHLLPEFDQGK 161
RCQ EGC ADLS K Y+ RHKVC HSKAP VV AG L QRFCQQCSRFHLL EFD K
Sbjct: 184 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAK 243
Query: 162 RSCRRRLAGHNERRRRPQTPLASRYGRLAASVGEHRRFRSFTLDFSYPRVPSSVRNA 218
+SCR+RLA HN RRRR P + GE RR ++ + + SS +NA
Sbjct: 244 KSCRKRLADHN-RRRRKSKPSDGEHS------GEKRRAQANKSAATKDKAGSSSKNA 293
>Os07g0505200 Similar to SBP-domain protein 6 (Fragment)
Length = 216
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 57/74 (77%)
Query: 104 CQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKRS 163
CQVE CG DLS Y RHKVC HSK P V+VAGL QRFCQQCSRFH L EFD KRS
Sbjct: 110 CQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRS 169
Query: 164 CRRRLAGHNERRRR 177
CRRRLAGHNERRR+
Sbjct: 170 CRRRLAGHNERRRK 183
>Os06g0659100 Similar to Squamosa-promoter binding protein 1
Length = 426
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 56/70 (80%)
Query: 103 RCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKR 162
RCQ EGC ADLSG K+Y+ RHKVC H+KA V +G +QRFCQQCSRFH+L EFD+ KR
Sbjct: 180 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKR 239
Query: 163 SCRRRLAGHN 172
SCR+RLA HN
Sbjct: 240 SCRKRLAEHN 249
>Os01g0922600 Similar to SBP-domain protein 4
Length = 311
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 116 IKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERR 175
+++Y+ RHKVC HSK V VAG +QRFCQQCSRFHLL EFD+ KRSCR+RL GHN+RR
Sbjct: 4 VRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRR 63
Query: 176 RRPQTPLASRYGRLAASVGEHRRFRSFTLDFSYPRVPSSVRNAWPA 221
R+PQ P G L A+ RF S+ FS S WPA
Sbjct: 64 RKPQ-PDPLNPGNLFANHHGAARFTSYPQIFSTAASMSPQETKWPA 108
>Os01g0292900 Similar to Squamosa-promoter binding-like protein 2
Length = 862
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 57/77 (74%)
Query: 104 CQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKRS 163
CQV+GC +LS ++Y RHKVC +H+K+ V + +E RFCQQCSRFH L EFD+GK+S
Sbjct: 107 CQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRFHFLQEFDEGKKS 166
Query: 164 CRRRLAGHNERRRRPQT 180
CR RLA HN RRR+ Q
Sbjct: 167 CRSRLAQHNRRRRKVQV 183
>Os02g0177300 Similar to Squamosa-promoter binding protein 1
Length = 458
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 60/76 (78%)
Query: 103 RCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKR 162
RCQ EGC ADLS K+Y+ RHKVC H+KA V+ AG +QRFCQQCSRFH+L EFD+ KR
Sbjct: 196 RCQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLAAGKQQRFCQQCSRFHVLAEFDEAKR 255
Query: 163 SCRRRLAGHNERRRRP 178
SCR+RL HN RRR+P
Sbjct: 256 SCRKRLTEHNRRRRKP 271
>Os05g0408200 SBP domain containing protein
Length = 842
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 57/75 (76%)
Query: 103 RCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKR 162
+CQV GC AD+ +K Y+ RH+VC + A V++ G+++R+CQQC +FH+L +FD+ KR
Sbjct: 170 KCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKR 229
Query: 163 SCRRRLAGHNERRRR 177
SCRR+L HN+RRRR
Sbjct: 230 SCRRKLERHNKRRRR 244
>Os11g0496700
Length = 162
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 37/47 (78%)
Query: 104 CQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSR 150
C V+GC +DLS ++Y+ RHKVC H+K P VVVAG EQRFCQQCSR
Sbjct: 116 CSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCSR 162
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,478,585
Number of extensions: 619150
Number of successful extensions: 1833
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 1825
Number of HSP's successfully gapped: 16
Length of query: 417
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 314
Effective length of database: 11,657,759
Effective search space: 3660536326
Effective search space used: 3660536326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)