Os01g0292900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Squamosa-promoter binding-like protein 2.
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Os01g0292900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Squamosa-promoter binding-like protein 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.67 | 0.328 | 10.7 | 1.25 | 0.285 | -0.992 | 0.568 | -0.0523 | 0.606 | 23.6 | 21.71 | 19 | -- | -- |
| 48.67 | 0.325 | 10.7 | 1.26 | 0.285 | -0.995 | 0.581 | -- | 0.608 | 23.5 | 21.76 | 18 | -- | -- |
| 49.77 | 0.329 | 10.7 | 1.12 | 0.272 | -1 | -- | -0.622 | 0.585 | 23.6 | 21.2 | 18 | -- | -- |
| 50.1 | 0.33 | 10.7 | 1.23 | 0.282 | -0.999 | -- | -- | 0.606 | 23.8 | 21.77 | 18 | -- | -- |
| 53.49 | 0.343 | 10.7 | 1.18 | -- | -1.18 | -- | -0.614 | 0.615 | -- | 21.1 | 17 | -- | -- |
| 63.63 | 0.374 | 10.8 | 1.05 | 0.62 | -- | 0.707 | -- | 0.444 | 1.35 | -- | -- | -- | -- |
| 65.65 | 0.379 | 10.8 | 1.03 | 0.621 | -- | -- | -- | 0.439 | 1.47 | -- | -- | -- | -- |
| 53.73 | 0.341 | 10.7 | 1.28 | -- | -1.22 | -- | -- | 0.644 | -- | 21.24 | 8 | -- | -- |
| 87.03 | 0.437 | 10.8 | -- | 0.414 | -0.62 | -- | -- | 0.401 | 0.837 | 23.2 | 19 | -- | -- |
| 89.34 | 0.442 | 10.7 | 1.05 | -- | -- | -- | -- | 0.453 | -- | -- | -- | -- | -- |
| 93.47 | 0.452 | 10.8 | -- | 0.639 | -- | -- | -- | 0.325 | 1.53 | -- | -- | -- | -- |
| 94.75 | 0.455 | 10.7 | -- | -- | -0.961 | -- | -- | 0.447 | -- | 23.2 | 19 | -- | -- |
| 118.53 | 0.508 | 10.8 | -- | -- | -- | -- | -- | 0.336 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 2 | 48.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 3 | 48.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 6 | 48.78 | temperature | 25 | 10 | < th | dose dependent | sin | 22 | NA |
| 8 | 48.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 9 | 48.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 12 | 49.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 14 | 49.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 16 | 49.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 26 | 49.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 30 | 49.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 33 | 49.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 37 | 49.48 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 44 | 49.55 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 77 | 49.98 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 87 | 50.07 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 119 | 50.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 123 | 50.32 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 137 | 50.41 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 138 | 50.42 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 145 | 50.45 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 166 | 50.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 189 | 50.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 192 | 50.77 | temperature | 15 | 10 | > th | dose dependent | sin | 22 | NA |
| 198 | 50.79 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 200 | 50.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 207 | 50.84 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 8 |
| 214 | 50.86 | temperature | 25 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 229 | 50.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 242 | 50.95 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 250 | 50.98 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 19 |
| 257 | 51.00 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 262 | 51.01 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 12 |
| 263 | 51.01 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 14 |
| 270 | 51.02 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 18 |
| 276 | 51.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 281 | 51.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 292 | 51.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 305 | 51.13 | radiation | 10 | 1440 | < th | dose dependent | sin | 17 | NA |
| 309 | 51.13 | humidity | 50 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 332 | 51.17 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 335 | 51.18 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 349 | 51.19 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 356 | 51.20 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 13 |
| 363 | 51.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 364 | 51.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 426 | 51.35 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 427 | 51.35 | humidity | 60 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 462 | 51.50 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 21 |
| 463 | 51.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 14 |
| 469 | 51.53 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 470 | 51.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 472 | 51.54 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 481 | 51.58 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 492 | 51.60 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 15 |
| 496 | 51.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 515 | 51.66 | temperature | 25 | 30 | > th | dose independent | rect. | 7 | 13 |
| 516 | 51.66 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 12 |
| 523 | 51.69 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 562 | 51.77 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 606 | 51.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 607 | 51.83 | humidity | 60 | 10 | > th | dose dependent | no | NA | NA |
| 615 | 51.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 616 | 51.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 617 | 51.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 629 | 51.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 630 | 51.86 | temperature | 25 | 30 | > th | dose independent | rect. | 23 | 23 |
| 636 | 51.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 17 |
| 651 | 51.88 | temperature | 25 | 30 | > th | dose independent | rect. | 23 | 21 |
| 655 | 51.88 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 710 | 51.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 747 | 51.96 | humidity | 60 | 10 | > th | dose dependent | rect. | 11 | 21 |
| 817 | 52.07 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 832 | 52.09 | humidity | 60 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 852 | 52.12 | temperature | 25 | 30 | < th | dose independent | rect. | 5 | 16 |
| 854 | 52.12 | temperature | 10 | 720 | > th | dose dependent | sin | 0 | NA |
| 860 | 52.12 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 867 | 52.13 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 934 | 52.18 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 962 | 52.21 | radiation | 10 | 1440 | > th | dose independent | sin | 19 | NA |