FiT-DB / Search/ Help/ Sample detail

Os07g0505200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SBP-domain protein 6 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.4 (0.0388) R2 : 0.794
β1 : 0.874 (0.183) R2dD : 0.0214 R2D : -0.29
β2 : 2.14 (0.0715) R2dC : 0.354 R2C : 0.162
β3 : -3.98 (0.229) R2dE : 0.533 R2E : -0.373
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -14.7 (0.55) R2dD*E : 0.679 R2D*E : 0.192
γ1 : 0.462 (0.0785) R2dN8 : 0.0292 R2N8 : -0.176
σ : 0.557
deviance : 142.91
__
_____
C
peak time of C : 0.0175
E
wheather : radiation
threshold : 21.84
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 9.04

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
131.49 0.539 13.4 0.831 2.1 -4.02 1.64 -15 0.419 0.061 30.12 4320 18 9
190.27 0.642 12.9 -0.146 2.05 -2.96 0.664 -- 0.303 0.481 45.33 47520 18.5 8.48
142.91 0.557 13.4 0.874 2.14 -3.98 -- -14.7 0.462 0.0175 21.84 4320 18 9.04
191.37 0.644 12.9 -0.178 2.18 -3.05 -- -- 0.322 0.364 67.61 47520 18.5 8.34
295.45 0.801 13.4 0.722 -- -4.31 -- -14.7 0.377 -- 27.06 4318 18 9.87
383.67 0.918 12.8 -1.43 1.87 -- 0.799 -- 0.501 0.864 -- -- -- --
386.32 0.92 12.8 -1.46 1.87 -- -- -- 0.498 0.802 -- -- -- --
370.15 0.896 13.1 0.856 -- -4.03 -- -- 0.407 -- 30.85 47506 18.2 10.1
191.66 0.645 12.9 -- 2.23 -3.13 -- -- 0.368 0.344 69.7 47520 18.5 8.54
603.62 1.15 12.8 -1.39 -- -- -- -- 0.532 -- -- -- -- --
442.4 0.984 12.8 -- 1.84 -- -- -- 0.66 0.767 -- -- -- --
352.93 0.875 13.1 -- -- -4.23 -- -- 0.301 -- 68.69 47513 18.2 10.3
654.64 1.19 12.8 -- -- -- -- -- 0.686 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 123.34 atmosphere 1005 43200 > th dose independent rect. 16 1
2 123.35 radiation 40 14400 < th dose dependent rect. 18 9
3 123.66 radiation 30 14400 < th dose dependent rect. 18 11
5 123.69 atmosphere 1005 43200 > th dose independent rect. 16 3
9 124.05 atmosphere 1005 43200 < th dose independent rect. 16 1
12 124.11 atmosphere 1005 43200 < th dose independent rect. 16 3
44 126.32 radiation 30 14400 < th dose dependent rect. 18 3
48 126.47 humidity 90 43200 > th dose dependent rect. 19 3
70 127.61 humidity 90 43200 < th dose independent rect. 18 3
85 128.96 humidity 90 43200 < th dose independent rect. 9 2
86 129.01 humidity 90 43200 > th dose independent rect. 9 1
97 129.71 humidity 90 43200 > th dose independent rect. 17 6
109 130.41 humidity 80 43200 > th dose dependent rect. 10 1
111 130.51 humidity 90 43200 > th dose independent rect. 22 1
167 133.08 wind 5 43200 > th dose independent rect. 11 1
169 133.11 radiation 1 14400 < th dose independent rect. 18 11
170 133.15 humidity 90 43200 < th dose independent rect. 8 15
178 133.53 radiation 1 43200 > th dose independent rect. 18 1
188 133.58 humidity 90 43200 > th dose independent rect. 8 16
201 133.89 radiation 1 14400 < th dose independent rect. 18 9
208 134.01 radiation 1 14400 < th dose independent rect. 18 7
217 134.18 radiation 1 14400 < th dose independent rect. 18 3
218 134.19 wind 5 43200 < th dose independent rect. 11 1
223 134.28 radiation 1 14400 < th dose independent rect. 18 1
232 134.53 humidity 90 43200 > th dose dependent rect. 8 16
248 135.01 wind 5 43200 > th dose independent rect. 10 3
252 135.13 wind 5 43200 < th dose independent rect. 10 3
275 135.60 humidity 90 43200 < th dose independent rect. 22 1
278 135.71 humidity 90 43200 > th dose dependent rect. 5 19
295 135.86 radiation 30 14400 < th dose independent rect. 15 17
332 136.62 radiation 20 14400 < th dose independent rect. 16 15
380 137.41 radiation 1 14400 < th dose dependent rect. 18 16
383 137.48 humidity 90 43200 < th dose independent sin 20 NA
479 138.92 wind 3 43200 > th dose dependent rect. 10 3
487 139.05 humidity 90 43200 > th dose independent sin 20 NA
497 139.13 humidity 90 43200 > th dose dependent sin 19 NA
513 139.29 radiation 1 14400 > th dose independent rect. 17 18
536 139.66 radiation 1 14400 < th dose independent rect. 17 18
549 139.82 wind 3 43200 < th dose dependent rect. 3 1
558 139.90 wind 3 43200 > th dose dependent rect. 11 1
563 139.97 radiation 1 14400 < th dose dependent sin 13 NA
592 140.29 wind 5 43200 < th dose independent rect. 5 1
614 140.46 temperature 20 43200 > th dose independent rect. 19 1
661 141.00 atmosphere 1005 43200 > th dose dependent rect. 4 1
672 141.12 temperature 25 43200 < th dose dependent rect. 17 1
716 141.71 humidity 80 43200 > th dose dependent rect. 9 10
719 141.73 humidity 80 43200 > th dose independent rect. 10 8
731 141.87 temperature 30 14400 < th dose dependent rect. 2 1
749 142.02 temperature 20 43200 < th dose independent rect. 19 2
760 142.06 temperature 10 14400 > th dose dependent rect. 2 1
765 142.08 temperature 30 14400 < th dose dependent rect. 21 7
771 142.13 temperature 10 14400 > th dose dependent rect. 21 7
773 142.14 temperature 30 14400 < th dose dependent rect. 21 9
774 142.14 radiation 1 14400 > th dose dependent rect. 17 13
776 142.15 temperature 10 14400 > th dose dependent rect. 21 9
785 142.22 temperature 10 14400 > th dose dependent rect. 19 11
786 142.23 temperature 30 14400 < th dose dependent rect. 19 11
791 142.25 atmosphere 1010 43200 < th dose independent rect. 7 1
802 142.30 wind 5 43200 < th dose independent rect. 5 9
808 142.33 temperature 30 14400 < th dose dependent rect. 22 1
811 142.35 temperature 10 14400 > th dose dependent rect. 22 1
837 142.44 radiation 30 14400 > th dose dependent rect. 15 17
839 142.46 humidity 80 43200 < th dose independent rect. 12 1
865 142.55 radiation 1 14400 < th dose dependent rect. 7 16
870 142.57 radiation 1 14400 < th dose dependent rect. 7 12
871 142.57 radiation 1 14400 < th dose dependent rect. 7 14
874 142.57 radiation 1 14400 < th dose dependent rect. 7 20
892 142.63 humidity 80 43200 < th dose independent rect. 10 7
915 142.73 wind 5 43200 > th dose independent rect. 5 9
937 142.81 radiation 1 14400 < th dose dependent rect. 7 23
964 142.92 humidity 90 43200 > th dose dependent rect. 5 6
994 143.02 radiation 1 14400 < th dose dependent rect. 5 1