BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0505200 Os07g0505200|Os07g0505200
(216 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0505200 Similar to SBP-domain protein 6 (Fragment) 265 1e-71
Os04g0551500 SBP domain containing protein 120 1e-27
Os04g0656500 Similar to Squamosa-promoter binding-like prot... 116 1e-26
Os08g0509600 Similar to Squamosa-promoter binding-like prot... 115 2e-26
Os06g0703500 Similar to SBP-domain protein 5 (Fragment) 110 7e-25
Os09g0507100 Similar to Squamosa-promoter binding-like prot... 109 2e-24
Os02g0174100 SBP domain containing protein 107 8e-24
Os03g0833300 Similar to Squamosa-promoter binding-like prot... 105 2e-23
Os08g0531600 Similar to Squamosa-promoter binding-like prot... 105 3e-23
Os09g0491532 Similar to Squamosa-promoter binding protein 2 102 2e-22
Os06g0659100 Similar to Squamosa-promoter binding protein 1 102 2e-22
Os01g0292900 Similar to Squamosa-promoter binding-like prot... 100 8e-22
Os02g0177300 Similar to Squamosa-promoter binding protein 1 96 2e-20
Os01g0922600 Similar to SBP-domain protein 4 95 4e-20
Os05g0408200 SBP domain containing protein 79 2e-15
>Os07g0505200 Similar to SBP-domain protein 6 (Fragment)
Length = 216
Score = 265 bits (678), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/216 (61%), Positives = 133/216 (61%)
Query: 1 MDRKDKARKNFXXXXXXXXXXXXXXXXXXXXXXXXXXLPSPMEEDKKPRLVXXXXXXXXX 60
MDRKDKARKNF LPSPMEEDKKPRLV
Sbjct: 1 MDRKDKARKNFSSSSSSSAASMAALAAAAAAGDGGAALPSPMEEDKKPRLVASSLAPVAG 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCQVERCGVDLS 120
RCQVERCGVDLS
Sbjct: 61 GGGGGSSSSAAVAAGASSSSSSSSVAAAARRGAGRAGGGAPSGGGGGPRCQVERCGVDLS 120
Query: 121 EAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNER 180
EAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNER
Sbjct: 121 EAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNER 180
Query: 181 RRKSAADTAHGENCRHADQDAGRSHQGTGNPPFQIR 216
RRKSAADTAHGENCRHADQDAGRSHQGTGNPPFQIR
Sbjct: 181 RRKSAADTAHGENCRHADQDAGRSHQGTGNPPFQIR 216
>Os04g0551500 SBP domain containing protein
Length = 360
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 70/107 (65%), Gaps = 3/107 (2%)
Query: 109 RCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKR 168
RCQVE C + L Y+RRHKVC+ H+K P V+V G QRFCQQCSRFH L EFDDAK+
Sbjct: 107 RCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKK 166
Query: 169 SCRRRLAGHNERRRKSAADTAHGENCRHADQDAGRSHQGTGNPPFQI 215
SCRRRLAGHNERRR+S A A H G G G PP+ +
Sbjct: 167 SCRRRLAGHNERRRRSNASEAMARGSAHPH---GMPVLGHGFPPYGL 210
>Os04g0656500 Similar to Squamosa-promoter binding-like protein 3
Length = 416
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 109 RCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAG-LRQRFCQQCSRFHELTEFDDAK 167
RCQ E C DLS A RY+RRHKVC+ HSK PVV+ AG L QRFCQQCSRFH L EFDDAK
Sbjct: 184 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAK 243
Query: 168 RSCRRRLAGHNERRRKS 184
+SCR+RLA HN RRRKS
Sbjct: 244 KSCRKRLADHNRRRRKS 260
>Os08g0509600 Similar to Squamosa-promoter binding-like protein 8
Length = 417
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 58/75 (77%)
Query: 109 RCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKR 168
RCQVE CG DLS Y RHKVC HSK P V+VAGL QRFCQQCSRFH L EFD KR
Sbjct: 103 RCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKR 162
Query: 169 SCRRRLAGHNERRRK 183
SCRRRLAGHNERRR+
Sbjct: 163 SCRRRLAGHNERRRR 177
>Os06g0703500 Similar to SBP-domain protein 5 (Fragment)
Length = 475
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 59/74 (79%)
Query: 110 CQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRS 169
CQVE C VDLS A Y+R+HKVC+ HSK P V+V+GL +RFCQQCSRFH L EFD K+S
Sbjct: 180 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKS 239
Query: 170 CRRRLAGHNERRRK 183
CRRRL+ HN RRRK
Sbjct: 240 CRRRLSDHNARRRK 253
>Os09g0507100 Similar to Squamosa-promoter binding-like protein 11
Length = 472
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 61/79 (77%)
Query: 110 CQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRS 169
C V+ C DLS+ Y+RRHKVC+ HSK PVV+V+G RFCQQCSRFH L EFD+AKRS
Sbjct: 115 CAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRS 174
Query: 170 CRRRLAGHNERRRKSAADT 188
CR+RL GHN RRRK AD+
Sbjct: 175 CRKRLDGHNRRRRKPQADS 193
>Os02g0174100 SBP domain containing protein
Length = 251
Score = 107 bits (266), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 61/87 (70%)
Query: 109 RCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKR 168
RCQVE CGV+L Y+R+H+VC+ HSK P V+VAG +RFCQQCSRFH L+EFD KR
Sbjct: 67 RCQVEGCGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFHALSEFDQKKR 126
Query: 169 SCRRRLAGHNERRRKSAADTAHGENCR 195
SCRRRL HN RRRK D + R
Sbjct: 127 SCRRRLYDHNARRRKPQTDVFSYASAR 153
>Os03g0833300 Similar to Squamosa-promoter binding-like protein 8
Length = 969
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 61/90 (67%)
Query: 110 CQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRS 169
CQVE C DL+ Y+RRHKVC+ H+K +V QRFCQQCSRFH L EFD+ KRS
Sbjct: 152 CQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCSRFHPLQEFDEGKRS 211
Query: 170 CRRRLAGHNERRRKSAADTAHGENCRHADQ 199
CRRRLAGHN RRRK+ + A G + D+
Sbjct: 212 CRRRLAGHNRRRRKTRPEVAVGGSAFTEDK 241
>Os08g0531600 Similar to Squamosa-promoter binding-like protein 3
Length = 455
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 64/92 (69%)
Query: 110 CQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRS 169
C V+ C DLS+ Y+RRHKVC+ HSK P+V+V+G RFCQQCSRFH L EFD+AKRS
Sbjct: 118 CAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSRFHLLQEFDEAKRS 177
Query: 170 CRRRLAGHNERRRKSAADTAHGENCRHADQDA 201
CR+RL GHN RRRK D + + + Q A
Sbjct: 178 CRKRLDGHNRRRRKPQPDPMNSASYLASQQGA 209
>Os09g0491532 Similar to Squamosa-promoter binding protein 2
Length = 323
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/56 (80%), Positives = 50/56 (89%)
Query: 128 RHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNERRRK 183
RHKVC H+KEP+V+VAGL QRFCQQCSRFH+L EFD K+SCRRRLAGHNERRRK
Sbjct: 22 RHKVCYMHAKEPIVVVAGLEQRFCQQCSRFHQLPEFDQEKKSCRRRLAGHNERRRK 77
>Os06g0659100 Similar to Squamosa-promoter binding protein 1
Length = 426
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 55/70 (78%)
Query: 109 RCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKR 168
RCQ E C DLS A Y+RRHKVC+ H+K VV +G +QRFCQQCSRFH LTEFD+AKR
Sbjct: 180 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKR 239
Query: 169 SCRRRLAGHN 178
SCR+RLA HN
Sbjct: 240 SCRKRLAEHN 249
>Os01g0292900 Similar to Squamosa-promoter binding-like protein 2
Length = 862
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 57/87 (65%)
Query: 110 CQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRS 169
CQV+ C V+LS A YN+RHKVC+ H+K VV + + RFCQQCSRFH L EFD+ K+S
Sbjct: 107 CQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRFHFLQEFDEGKKS 166
Query: 170 CRRRLAGHNERRRKSAADTAHGENCRH 196
CR RLA HN RRRK N H
Sbjct: 167 CRSRLAQHNRRRRKVQVQAGVDVNSLH 193
>Os02g0177300 Similar to Squamosa-promoter binding protein 1
Length = 458
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 57/78 (73%)
Query: 109 RCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKR 168
RCQ E C DLS A Y+RRHKVC H+K VL AG +QRFCQQCSRFH L EFD+AKR
Sbjct: 196 RCQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLAAGKQQRFCQQCSRFHVLAEFDEAKR 255
Query: 169 SCRRRLAGHNERRRKSAA 186
SCR+RL HN RRRK A
Sbjct: 256 SCRKRLTEHNRRRRKPTA 273
>Os01g0922600 Similar to SBP-domain protein 4
Length = 311
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 51/63 (80%)
Query: 125 YNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNERRRKS 184
Y+RRHKVC+ HSK VV VAG +QRFCQQCSRFH L EFD+ KRSCR+RL GHN+RRRK
Sbjct: 7 YHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKP 66
Query: 185 AAD 187
D
Sbjct: 67 QPD 69
>Os05g0408200 SBP domain containing protein
Length = 842
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 53/75 (70%)
Query: 109 RCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKR 168
+CQV C D+ E Y+RRH+VC + V++ G+++R+CQQC +FH L +FD+ KR
Sbjct: 170 KCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKR 229
Query: 169 SCRRRLAGHNERRRK 183
SCRR+L HN+RRR+
Sbjct: 230 SCRRKLERHNKRRRR 244
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,263,913
Number of extensions: 182115
Number of successful extensions: 535
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 16
Length of query: 216
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 119
Effective length of database: 11,971,043
Effective search space: 1424554117
Effective search space used: 1424554117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)