Os06g0659100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Squamosa-promoter binding protein 1.
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Os06g0659100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Squamosa-promoter binding protein 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 318.05 | 0.838 | 7.31 | -0.254 | 1.82 | 2.37 | 1.33 | 5.32 | -1.18 | 12.2 | 23.2 | 220 | -- | -- |
| 347.7 | 0.868 | 7.21 | 0.381 | 1.73 | 1.45 | 0.419 | -- | -1.03 | 12.3 | 24.75 | 251 | -- | -- |
| 322.73 | 0.837 | 7.32 | -0.206 | 1.73 | 2.43 | -- | 5.3 | -1.16 | 12.3 | 23.17 | 329 | -- | -- |
| 348.57 | 0.87 | 7.22 | 0.382 | 1.74 | 1.44 | -- | -- | -1.03 | 12.3 | 24.64 | 253 | -- | -- |
| 440.22 | 0.977 | 7.35 | -0.398 | -- | 2.25 | -- | 5.11 | -1.18 | -- | 31.75 | 897 | -- | -- |
| 377.26 | 0.911 | 7.28 | -0.00592 | 1.63 | -- | 0.535 | -- | -1.3 | 11.9 | -- | -- | -- | -- |
| 378.49 | 0.911 | 7.28 | 0.016 | 1.62 | -- | -- | -- | -1.3 | 11.9 | -- | -- | -- | -- |
| 462.59 | 1 | 7.23 | 0.588 | -- | 2.26 | -- | -- | -0.96 | -- | 42.95 | 905 | -- | -- |
| 352.07 | 0.874 | 7.23 | -- | 1.72 | 1.3 | -- | -- | -1.08 | 12.2 | 24.6 | 251 | -- | -- |
| 544.38 | 1.09 | 7.31 | -0.0336 | -- | -- | -- | -- | -1.32 | -- | -- | -- | -- | -- |
| 378.49 | 0.91 | 7.28 | -- | 1.62 | -- | -- | -- | -1.3 | 11.9 | -- | -- | -- | -- |
| 470.68 | 1.01 | 7.25 | -- | -- | 2.03 | -- | -- | -1.06 | -- | 62.04 | 898 | -- | -- |
| 544.41 | 1.09 | 7.31 | -- | -- | -- | -- | -- | -1.32 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 311.91 | temperature | 25.0 | 720 | < th | dose dependent | sin | 18 | NA |
| 3 | 312.38 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 15 |
| 22 | 315.17 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 26 | 315.38 | temperature | 20.0 | 270 | > th | dose independent | rect. | 9 | 22 |
| 28 | 315.63 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 46 | 316.56 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 48 | 316.73 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 55 | 316.88 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 56 | 317.00 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 58 | 317.12 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 78 | 318.23 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 95 | 318.90 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 99 | 319.28 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 122 | 320.44 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 128 | 320.96 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 136 | 321.35 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 140 | 321.46 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 141 | 321.46 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 150 | 321.60 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 153 | 321.64 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 157 | 321.67 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 160 | 321.69 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 173 | 321.84 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 228 | 322.12 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 13 |
| 229 | 322.17 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 231 | 322.18 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 11 |
| 241 | 322.25 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 21 |
| 249 | 322.29 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 19 |
| 262 | 322.36 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 3 |
| 290 | 322.65 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 7 |
| 303 | 322.70 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 311 | 322.75 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 379 | 323.21 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 11 | 18 |
| 389 | 323.27 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 23 |
| 428 | 323.73 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 434 | 323.80 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 462 | 323.90 | temperature | 20.0 | 10 | > th | dose independent | rect. | 14 | 17 |
| 473 | 323.96 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 481 | 324.02 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 484 | 324.04 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 567 | 324.74 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 568 | 324.78 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 578 | 324.86 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 21 |
| 621 | 325.18 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 622 | 325.19 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 7 |
| 627 | 325.21 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 628 | 325.22 | temperature | 25.0 | 10 | < th | dose dependent | no | NA | NA |
| 638 | 325.26 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 641 | 325.29 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 646 | 325.32 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 649 | 325.35 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 650 | 325.35 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 672 | 325.55 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 693 | 325.63 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 705 | 325.68 | temperature | 20.0 | 720 | > th | dose dependent | sin | 17 | NA |
| 711 | 325.70 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 9 |
| 738 | 325.81 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 785 | 326.08 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 809 | 326.23 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 810 | 326.23 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 816 | 326.26 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 832 | 326.35 | temperature | 20.0 | 270 | > th | dose independent | sin | 14 | NA |
| 852 | 326.44 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 856 | 326.48 | temperature | 20.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 902 | 326.75 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 21 | 5 |
| 938 | 326.92 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 970 | 327.08 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 995 | 327.21 | temperature | 20.0 | 270 | < th | dose independent | sin | 13 | NA |